Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90766 | Canola | nucleus | 96.04 | 95.59 |
| AT4G10640.1 | Thale cress | nucleus | 78.55 | 79.67 |
| GSMUA_Achr6P02050_001 | Banana | cytosol | 16.78 | 46.45 |
| PGSC0003DMT400031576 | Potato | nucleus | 45.45 | 39.31 |
| Solyc08g083240.2.1 | Tomato | nucleus | 44.76 | 39.26 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 42.19 | 39.26 |
| GSMUA_Achr1P18950_001 | Banana | nucleus | 41.26 | 38.65 |
| GSMUA_Achr1P16160_001 | Banana | nucleus | 39.86 | 38.17 |
| CDX90011 | Canola | nucleus | 44.06 | 37.2 |
| VIT_02s0025g02690.t01 | Wine grape | mitochondrion, nucleus | 45.92 | 36.89 |
| CDY15200 | Canola | nucleus | 43.82 | 36.79 |
| Os08t0115200-01 | Rice | cytosol | 46.39 | 36.65 |
| CDX91859 | Canola | mitochondrion, nucleus | 44.29 | 35.85 |
| CDY69140 | Canola | mitochondrion, nucleus | 43.82 | 35.81 |
| TraesCSU01G104800.3 | Wheat | nucleus | 45.22 | 35.6 |
| TraesCS7B01G218800.3 | Wheat | nucleus | 45.22 | 35.6 |
| TraesCS7A01G317400.2 | Wheat | nucleus | 44.99 | 35.48 |
| HORVU7Hr1G075720.1 | Barley | plasma membrane | 44.99 | 35.35 |
| Zm00001d049684_P002 | Maize | cytosol, mitochondrion | 44.52 | 35.11 |
| EES14418 | Sorghum | cytosol | 46.15 | 34.49 |
| CDY08131 | Canola | nucleus | 22.84 | 28.49 |
| CDY05931 | Canola | nucleus | 22.84 | 27.84 |
| CDX96427 | Canola | cytosol | 14.69 | 25.93 |
| CDY37387 | Canola | cytosol | 23.08 | 25.78 |
| CDY35313 | Canola | nucleus | 23.31 | 25.19 |
| CDX72935 | Canola | cytosol | 15.38 | 25.1 |
| CDX77034 | Canola | cytosol | 23.08 | 25.0 |
| CDY17214 | Canola | cytosol, plastid | 15.15 | 24.53 |
| CDY10618 | Canola | cytosol | 23.08 | 24.38 |
| CDY27925 | Canola | plastid | 14.92 | 24.15 |
| CDY23202 | Canola | cytosol | 24.71 | 23.82 |
| CDY24286 | Canola | cytosol | 22.38 | 23.76 |
| CDX92933 | Canola | cytosol, plastid | 22.14 | 23.69 |
| CDX95328 | Canola | cytosol | 24.48 | 23.6 |
| CDY32322 | Canola | cytosol, plastid | 13.99 | 23.17 |
| CDY11238 | Canola | cytosol, plastid | 20.98 | 21.79 |
| CDY10410 | Canola | cytosol, plastid | 22.38 | 21.62 |
| CDY20099 | Canola | cytosol | 13.29 | 21.59 |
| CDY04876 | Canola | nucleus, plastid | 22.38 | 21.57 |
| CDX80849 | Canola | cytosol, plastid | 21.21 | 21.36 |
| CDY62768 | Canola | cytosol | 13.75 | 21.3 |
| CDY39505 | Canola | cytosol | 19.58 | 21.27 |
| CDY48305 | Canola | nucleus | 18.41 | 21.07 |
| CDY26241 | Canola | nucleus | 18.41 | 21.07 |
| CDY55696 | Canola | nucleus, plastid | 21.45 | 21.05 |
| CDY58749 | Canola | cytosol | 21.91 | 20.61 |
| CDY30433 | Canola | cytosol | 21.45 | 20.44 |
| CDY23391 | Canola | cytosol | 21.91 | 20.39 |
| CDY05984 | Canola | nucleus | 23.31 | 20.2 |
| CDX71881 | Canola | nucleus | 23.08 | 20.04 |
| CDX70333 | Canola | cytosol | 21.91 | 19.58 |
| CDY00196 | Canola | nucleus | 21.45 | 19.37 |
| CDX86983 | Canola | nucleus | 21.21 | 19.16 |
| CDY38525 | Canola | cytosol | 18.41 | 19.13 |
| CDY05917 | Canola | mitochondrion, nucleus | 20.98 | 18.95 |
| CDY08120 | Canola | mitochondrion, nucleus | 20.51 | 18.57 |
| CDX83237 | Canola | cytosol | 19.81 | 16.77 |
| CDX72934 | Canola | nucleus, plastid | 3.96 | 16.67 |
| CDX96426 | Canola | nucleus, plastid | 3.96 | 16.67 |
| CDY07937 | Canola | nucleus | 18.18 | 16.32 |
| CDX92931 | Canola | mitochondrion, nucleus | 9.56 | 16.08 |
| CDX79809 | Canola | nucleus | 22.38 | 16.05 |
| CDX73992 | Canola | nucleus | 17.72 | 15.93 |
| CDX83468 | Canola | plasma membrane | 20.28 | 15.79 |
| CDY66694 | Canola | nucleus | 21.91 | 15.69 |
| CDY44247 | Canola | nucleus | 20.05 | 15.47 |
| CDY22198 | Canola | cytosol | 19.58 | 15.03 |
| CDY41307 | Canola | cytosol | 18.88 | 14.81 |
| CDY05918 | Canola | mitochondrion | 10.26 | 14.01 |
| CDY24282 | Canola | mitochondrion | 9.79 | 13.77 |
Protein Annotations
| EnsemblPlants:CDY05111 | EnsemblPlantsGene:GSBRNA2T00119886001 | Gene3D:1.20.5.190 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:DUF4005 | InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | InterPro:P-loop_NTPase | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF50 |
| PFAM:PF00612 | PFAM:PF13178 | PFscan:PS50096 | ProteinID:CDY05111 | ProteinID:CDY05111.1 | SEG:seg |
| SMART:SM00015 | SUPFAM:SSF52540 | UniParc:UPI0004EED24D | MapMan:35.2 | : | : |
Description
BnaC03g29090D
Coordinates
chrLK031959:+:798814..801640
Molecular Weight (calculated)
48873.1 Da
IEP (calculated)
10.597
GRAVY (calculated)
-0.803
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKNGTSWL TAVKKILWSP SKDSDKKSHQ KEADYNKQKK EKKGWIFRKT KVENTDSVTD TIPKAEKEEK DKPAVAEVVK LTATPGFIRR HWAAIIIQTA
101: FRGYLAKRAF GALKGIVKLQ ALVRGHNVRN QAKHTLRCIK ALVRVQDQVL SHHHQQQQRS RVLSSSPSSN CYDIEARRNS MFAESNGFWD SKTYLQDIRS
201: RRSLSRDMSR CTNEFVVNQE ESQSILQKRL KIAIEREKAH ALALSNQIRS RSYRNQSAGD DRELLERTRW LDRWMATKQW DNTITIPTTR DQVKTLEMDT
301: NIATTTHHHR SYPATPPSCR ATRTFGIRSA SPRIPCSSPS PMVQPNYMSA TESAKAKART QSTPRRRPVI TAKKRLCYAE EGSVRSPSLK SAYNVCLCGE
401: HESDYSCCYG DGLAGKVSPC STSDLRWLQ
101: FRGYLAKRAF GALKGIVKLQ ALVRGHNVRN QAKHTLRCIK ALVRVQDQVL SHHHQQQQRS RVLSSSPSSN CYDIEARRNS MFAESNGFWD SKTYLQDIRS
201: RRSLSRDMSR CTNEFVVNQE ESQSILQKRL KIAIEREKAH ALALSNQIRS RSYRNQSAGD DRELLERTRW LDRWMATKQW DNTITIPTTR DQVKTLEMDT
301: NIATTTHHHR SYPATPPSCR ATRTFGIRSA SPRIPCSSPS PMVQPNYMSA TESAKAKART QSTPRRRPVI TAKKRLCYAE EGSVRSPSLK SAYNVCLCGE
401: HESDYSCCYG DGLAGKVSPC STSDLRWLQ
001: MAKKNGTSWF TAVKKILWSP SKDSDKKTHH HKETDIKRKE KKGWIFRKTK LETTNSVLQH TVRTVEAEEK EKPPVIVSSV EEGVTEIVKL TATPGFIRRH
101: WAAIIIQTAF RGYLSRRALR ALKGIVKLQA LVRGNNVRNQ AKLTLRCIKA LVRVQDQVLN HHQQQRSRVL LSPPSRNYNI EARRNSMFAE SNGFWDTKTY
201: LQDIRSRRSL SRDMNRCNNE FYSEETELIL QKKLEIAIKR EKAQALALSN QIRSRSSRNQ SAGDDRELLE RTQWLDRWMA TKQWDDTITN STNVRDPIKT
301: LEAVTTHHHQ RSYPATPPSC RASRSVMVRS ASPRIPCSPS SMQPNYMSAT ESAKAKARTQ STPRRRPMTA KKRLCYAEEE SLRSPSFKSC LWGDHESDYS
401: CCYGDGFAGK ISPCSTTELR WLK
101: WAAIIIQTAF RGYLSRRALR ALKGIVKLQA LVRGNNVRNQ AKLTLRCIKA LVRVQDQVLN HHQQQRSRVL LSPPSRNYNI EARRNSMFAE SNGFWDTKTY
201: LQDIRSRRSL SRDMNRCNNE FYSEETELIL QKKLEIAIKR EKAQALALSN QIRSRSSRNQ SAGDDRELLE RTQWLDRWMA TKQWDDTITN STNVRDPIKT
301: LEAVTTHHHQ RSYPATPPSC RASRSVMVRS ASPRIPCSPS SMQPNYMSAT ESAKAKARTQ STPRRRPMTA KKRLCYAEEE SLRSPSFKSC LWGDHESDYS
401: CCYGDGFAGK ISPCSTTELR WLK
Arabidopsis Description
IQD16At4g10640 [Source:UniProtKB/TrEMBL;Acc:Q7XA83]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.