CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000930.1-P	Field mustard	mitochondrion, nucleus	97.14	97.14
CDX91859	Canola	mitochondrion, nucleus	96.0	95.09
AT4G00820.1	Thale cress	mitochondrion, nucleus	82.48	81.09
CDX90011	Canola	nucleus	66.48	68.7
CDY15200	Canola	nucleus	66.67	68.49
Solyc10g005000.2.1	Tomato	nucleus	43.43	57.87
PGSC0003DMT400029325	Potato	mitochondrion	35.43	56.02
KRH06386	Soybean	mitochondrion, nucleus	58.67	56.0
KRH47821	Soybean	nucleus	57.9	55.68
VIT_15s0048g02680.t01	Wine grape	nucleus	58.48	55.12
GSMUA_Achr1P18950_001	Banana	nucleus	43.43	49.78
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	43.05	49.02
TraesCSU01G104800.3	Wheat	nucleus	49.33	47.52
TraesCS7A01G317400.2	Wheat	nucleus	49.14	47.43
Os08t0115200-01	Rice	cytosol	48.95	47.33
GSMUA_Achr1P16160_001	Banana	nucleus	40.38	47.32
HORVU7Hr1G075720.1	Barley	plasma membrane	49.14	47.25
TraesCS7B01G218800.3	Wheat	nucleus	48.95	47.16
GSMUA_Achr6P02050_001	Banana	cytosol	13.52	45.81
EES14418	Sorghum	cytosol	48.95	44.77
Zm00001d049684_P002	Maize	cytosol, mitochondrion	45.9	44.3
CDY05111	Canola	nucleus	35.81	43.82
CDX90766	Canola	nucleus	35.43	43.16
CDY08131	Canola	nucleus	22.1	33.72
CDY05931	Canola	nucleus	22.29	33.24
CDY35313	Canola	nucleus	21.33	28.21
CDX77034	Canola	cytosol	20.95	27.78
CDX96427	Canola	cytosol	12.38	26.75
CDY11238	Canola	cytosol, plastid	20.95	26.63
CDY23202	Canola	cytosol	22.48	26.52
CDX95328	Canola	cytosol	22.1	26.07
CDY37387	Canola	cytosol	19.05	26.04
CDY10410	Canola	cytosol, plastid	21.9	25.9
CDX80849	Canola	cytosol, plastid	20.95	25.82
CDY04876	Canola	nucleus, plastid	21.71	25.62
CDX72935	Canola	cytosol	12.76	25.48
CDY55696	Canola	nucleus, plastid	21.14	25.4
CDY24286	Canola	cytosol	19.43	25.25
CDY10618	Canola	cytosol	19.43	25.12
CDY32322	Canola	cytosol, plastid	12.19	24.71
CDX92933	Canola	cytosol, plastid	18.86	24.69
CDY17214	Canola	cytosol, plastid	12.38	24.53
CDY27925	Canola	plastid	12.19	24.15
CDY20099	Canola	cytosol	12.0	23.86
CDX70333	Canola	cytosol	21.52	23.54
CDY05917	Canola	mitochondrion, nucleus	21.14	23.37
CDX86983	Canola	nucleus	20.76	22.95
CDY00196	Canola	nucleus	20.76	22.95
CDX71881	Canola	nucleus	21.52	22.87
CDY08120	Canola	mitochondrion, nucleus	20.57	22.78
CDY39505	Canola	cytosol	17.14	22.78
CDY05984	Canola	nucleus	21.33	22.63
CDY62768	Canola	cytosol	11.81	22.38
CDY58749	Canola	cytosol	19.05	21.93
CDY30433	Canola	cytosol	18.67	21.78
CDY48305	Canola	nucleus	15.43	21.6
CDY23391	Canola	cytosol	18.86	21.48
CDY26241	Canola	nucleus	15.24	21.33
CDY38525	Canola	cytosol	15.81	20.1
CDX83237	Canola	cytosol	17.9	18.54
CDX73992	Canola	nucleus	16.57	18.24
CDX79809	Canola	nucleus	20.76	18.23
CDY05918	Canola	mitochondrion	10.67	17.83
CDY66694	Canola	nucleus	20.19	17.7
CDX83468	Canola	plasma membrane	18.29	17.42
CDY07937	Canola	nucleus	15.81	17.36
CDY22198	Canola	cytosol	18.48	17.35
CDX92931	Canola	mitochondrion, nucleus	8.38	17.25
CDY41307	Canola	cytosol	17.9	17.18
CDY44247	Canola	nucleus	17.71	16.73
CDY24282	Canola	mitochondrion	8.57	14.75
CDX96426	Canola	nucleus, plastid	2.67	13.73
CDX72934	Canola	nucleus, plastid	2.67	13.73

Protein Annotations

EnsemblPlants:CDY69140	EnsemblPlantsGene:GSBRNA2T00083484001	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF50	PFAM:PF00612
PFAM:PF13178	PFscan:PS50096	ProteinID:CDY69140	ProteinID:CDY69140.1	SEG:seg	SMART:SM00015
UniParc:UPI0004EEDE8C	UniProt:A0A078JRT3	MapMan:35.2	:	:	:

Description

BnaAnng29450DBnaAnng29450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JRT3]

Coordinates

chrLK038734:+:1732..3644

Molecular Weight (calculated)

58827.5 Da

IEP (calculated)

10.843

GRAVY (calculated)

-1.006

Length

525 amino acids

Sequence
(BLAST)

001: MGKKSGSSSS SWLTAVKRAF RSPTKKEHNN NNINAHGNEA EEDDDKKREK RRWLFRKTTN HDSPAKTTGV VKDGSAPKPV ETAAINTNAS SSVSEQRNAA
101: PPPPTTVSVA TELPPETAEL PSISSRSYSA RESYAAIIIQ TCFRGYLARR ALRALKGLVK LQALVRGHNV RKQAKMTLRC MQALVRVQSR VLDQRKRLSH
201: DGTRKSAFSD THSVLESRYL QDISDRRSMS REGSSIAEDW EERPQTIQEV KAMLQERRDN SLSKAFSQQI RRTRGSQSIG EEEEDRPKWL DRWMSSKPWD
301: KRASTDQRPP VYKTVEIDTS QPYLTRAHSR TGASPSRSQR PDTPSRTSHH YNHQQQHSFS SATPSPAKSR PIQIRSASPR IQRDDRFAYS YTSNTPSLRS
401: NYSFTARSGY SVCTTTTLPN YMAITESAKA RIRSHSAPRQ RPLTPEKDRA GSARKRLSYP VPLQPPVDYG DSNSQSLRSP SLKSIGGSQL GALEQQSNYS
501: SCYTESVGGG GEISPASTSD RRWLR

Best Arabidopsis Sequence Match ( AT4G00820.1 )
(BLAST)

001: MGKKSGSSSS WLTAVKRAFR SPTKKEHNNN AHGNEVDEDE DKKKEKRRWL FRKSTNHDSP VKTSGVGKDA PAQKSTETTT IINPTVLSSV TEQRYDASTP
101: PATVSAASET HPPSTTKELP NLTRRTYTAR EDYAAVVIQT GFRGYLARRA LRALKGLVKL QALVRGHNVR KQAKMTLRCM QALVRVQSRV LDQRKRLSHD
201: GSRKSAFSDT QSVLESRYLQ EISDRRSMSR EGSSIAEDWD DRPHTIEEVK AMLQQRRDNA LRRESNNSIS QAFSHQVRRT RGSYSTGDEY EEERPKWLDR
301: WMASKPWDKR ASTDQRVPPV YKTVEIDTSQ PYLTRGNSRT GASPSRSQRP SSPSRTSHHY QQHNFSSATP SPAKSRPIQI RSASPRIQRD DRSAYNYTSN
401: TPSLRSNYSF TARSGYSVCT TTTTATNAAL PNYMAITESA KARIRSQSAP RQRPSTPEKE RISSARKRLS FPVPPLPQQM DGQSLRSPSF KSIGGSQLGA
501: LEQQSNYSSC CTESLGGGGE ISPASTSDYR RWLR

Arabidopsis Description

iqd17IQ-domain 17 [Source:UniProtKB/TrEMBL;Acc:F4JHN2]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.