Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G317400.2 | Wheat | nucleus | 98.53 | 98.9 |
| TraesCSU01G104800.3 | Wheat | nucleus | 98.17 | 98.35 |
| TraesCS7B01G218800.3 | Wheat | nucleus | 97.99 | 98.17 |
| Os08t0115200-01 | Rice | cytosol | 84.07 | 84.53 |
| Zm00001d049684_P002 | Maize | cytosol, mitochondrion | 77.11 | 77.39 |
| EES14418 | Sorghum | cytosol | 80.77 | 76.83 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 61.9 | 73.32 |
| GSMUA_Achr1P18950_001 | Banana | nucleus | 61.36 | 73.14 |
| GSMUA_Achr1P16160_001 | Banana | nucleus | 57.33 | 69.87 |
| Solyc10g005000.2.1 | Tomato | nucleus | 41.58 | 57.61 |
| VIT_15s0048g02680.t01 | Wine grape | nucleus | 58.06 | 56.91 |
| PGSC0003DMT400029325 | Potato | mitochondrion | 33.7 | 55.42 |
| KRH47821 | Soybean | nucleus | 55.31 | 55.31 |
| KRH06386 | Soybean | mitochondrion, nucleus | 55.49 | 55.09 |
| VIT_02s0025g02690.t01 | Wine grape | mitochondrion, nucleus | 53.11 | 54.31 |
| VIT_16s0098g01070.t01 | Wine grape | mitochondrion, nucleus | 45.05 | 53.25 |
| CDY15200 | Canola | nucleus | 48.35 | 51.66 |
| AT4G00820.1 | Thale cress | mitochondrion, nucleus | 50.37 | 51.5 |
| CDX90011 | Canola | nucleus | 47.8 | 51.38 |
| Bra033284.1-P | Field mustard | nucleus | 48.72 | 50.57 |
| AT1G01110.2 | Thale cress | nucleus | 48.35 | 50.09 |
| CDY69140 | Canola | mitochondrion, nucleus | 47.25 | 49.14 |
| CDX91859 | Canola | mitochondrion, nucleus | 47.62 | 49.06 |
| PGSC0003DMT400031576 | Potato | nucleus | 44.51 | 48.99 |
| Solyc08g083240.2.1 | Tomato | nucleus | 43.77 | 48.88 |
| Bra000930.1-P | Field mustard | mitochondrion, nucleus | 45.97 | 47.81 |
| CDY05111 | Canola | nucleus | 35.35 | 44.99 |
| Bra000717.1-P | Field mustard | nucleus | 35.53 | 44.91 |
| CDX90766 | Canola | nucleus | 35.35 | 44.78 |
| AT4G10640.1 | Thale cress | nucleus | 33.15 | 42.79 |
| Solyc01g009340.2.1 | Tomato | nucleus | 28.02 | 37.97 |
| CDY08131 | Canola | nucleus | 23.08 | 36.63 |
| PGSC0003DMT400038175 | Potato | cytosol | 34.62 | 36.56 |
| Bra017988.1-P | Field mustard | nucleus | 23.26 | 36.29 |
| CDY05931 | Canola | nucleus | 23.26 | 36.08 |
| AT3G49380.1 | Thale cress | nucleus | 22.34 | 34.66 |
| HORVU1Hr1G013210.1 | Barley | cytosol | 27.29 | 30.79 |
| HORVU3Hr1G087500.2 | Barley | cytosol | 27.11 | 29.66 |
| HORVU3Hr1G066840.2 | Barley | cytosol | 19.96 | 25.59 |
| HORVU3Hr1G117830.2 | Barley | endoplasmic reticulum, extracellular | 26.92 | 25.17 |
| HORVU5Hr1G007780.1 | Barley | cytosol | 18.86 | 24.01 |
| HORVU7Hr1G024060.1 | Barley | plastid | 7.69 | 23.86 |
| HORVU3Hr1G019240.2 | Barley | mitochondrion, peroxisome | 21.61 | 23.84 |
| HORVU1Hr1G071700.1 | Barley | nucleus | 21.25 | 22.57 |
| HORVU1Hr1G079590.12 | Barley | cytosol | 19.23 | 22.44 |
| HORVU7Hr1G023980.1 | Barley | nucleus | 13.37 | 22.32 |
| HORVU5Hr1G092660.2 | Barley | nucleus | 17.77 | 22.15 |
| HORVU3Hr1G089690.1 | Barley | cytosol | 21.25 | 18.47 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G075720.1 | EnsemblPlantsGene:HORVU7Hr1G075720 | Gene3D:1.20.5.190 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:DUF4005 | InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF0 | PFAM:PF00612 |
| PFAM:PF13178 | PFscan:PS50096 | SEG:seg | SMART:SM00015 | UniParc:UPI000295E3A9 | UniProt:M0V0H3 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:-:440066157..440068689
Molecular Weight (calculated)
59539.3 Da
IEP (calculated)
11.345
GRAVY (calculated)
-0.804
Length
546 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNKKGGSSW LTAVKRAFRS PSKEDSPKKS ARLREDPDAD EDKTKRERRR WLFRRSSSPS PSPASATAPP EQQQSAARSA PAPAVTDEQR HAIALAVATA
101: ATAEAAVATA QAAAEVVRLT RPSSSFVREH YAAIVVQTAF RGYLARRALR ALKGLVKLQA LVRGHNVRKQ ANMTLRCMQA LVRVQARVRD QRMRLSQESL
201: SAAGAAACGS SKSSYSVDTS ALWDSKYTQE YAERRSVERS RDGSSFAAED WDDRPRTIEE IQAMLQTRKD AALKRERALS YAFSHQIWRN PAPSVEEEMD
301: VDGQPRWAER WMASRASFDT NRSSTRTAAA AAAAAPGRAS TDHRDQVKTL EIDTARPFSY STPRRHAPPS QHGNGSPMHR AHHQASVTPS PGKARPPIQV
401: RSASPRVERG TGGGGGSYTP SLHSQRHASS GSAVPNYMAA TESAKARIRS QSAPRQRPAT PERDRPQTAY NNPAGGSAKK RLSFPVPQDP YGVGYAQSLR
501: SPSFKSATGR FTSEQRSTVS SLSCAESIGG EPVSPSSTTD LRRWLR
101: ATAEAAVATA QAAAEVVRLT RPSSSFVREH YAAIVVQTAF RGYLARRALR ALKGLVKLQA LVRGHNVRKQ ANMTLRCMQA LVRVQARVRD QRMRLSQESL
201: SAAGAAACGS SKSSYSVDTS ALWDSKYTQE YAERRSVERS RDGSSFAAED WDDRPRTIEE IQAMLQTRKD AALKRERALS YAFSHQIWRN PAPSVEEEMD
301: VDGQPRWAER WMASRASFDT NRSSTRTAAA AAAAAPGRAS TDHRDQVKTL EIDTARPFSY STPRRHAPPS QHGNGSPMHR AHHQASVTPS PGKARPPIQV
401: RSASPRVERG TGGGGGSYTP SLHSQRHASS GSAVPNYMAA TESAKARIRS QSAPRQRPAT PERDRPQTAY NNPAGGSAKK RLSFPVPQDP YGVGYAQSLR
501: SPSFKSATGR FTSEQRSTVS SLSCAESIGG EPVSPSSTTD LRRWLR
001: MGKKSGSSSS WLTAVKRAFR SPTKKEHNNN AHGNEVDEDE DKKKEKRRWL FRKSTNHDSP VKTSGVGKDA PAQKSTETTT IINPTVLSSV TEQRYDASTP
101: PATVSAASET HPPSTTKELP NLTRRTYTAR EDYAAVVIQT GFRGYLARRA LRALKGLVKL QALVRGHNVR KQAKMTLRCM QALVRVQSRV LDQRKRLSHD
201: GSRKSAFSDT QSVLESRYLQ EISDRRSMSR EGSSIAEDWD DRPHTIEEVK AMLQQRRDNA LRRESNNSIS QAFSHQVRRT RGSYSTGDEY EEERPKWLDR
301: WMASKPWDKR ASTDQRVPPV YKTVEIDTSQ PYLTRGNSRT GASPSRSQRP SSPSRTSHHY QQHNFSSATP SPAKSRPIQI RSASPRIQRD DRSAYNYTSN
401: TPSLRSNYSF TARSGYSVCT TTTTATNAAL PNYMAITESA KARIRSQSAP RQRPSTPEKE RISSARKRLS FPVPPLPQQM DGQSLRSPSF KSIGGSQLGA
501: LEQQSNYSSC CTESLGGGGE ISPASTSDYR RWLR
101: PATVSAASET HPPSTTKELP NLTRRTYTAR EDYAAVVIQT GFRGYLARRA LRALKGLVKL QALVRGHNVR KQAKMTLRCM QALVRVQSRV LDQRKRLSHD
201: GSRKSAFSDT QSVLESRYLQ EISDRRSMSR EGSSIAEDWD DRPHTIEEVK AMLQQRRDNA LRRESNNSIS QAFSHQVRRT RGSYSTGDEY EEERPKWLDR
301: WMASKPWDKR ASTDQRVPPV YKTVEIDTSQ PYLTRGNSRT GASPSRSQRP SSPSRTSHHY QQHNFSSATP SPAKSRPIQI RSASPRIQRD DRSAYNYTSN
401: TPSLRSNYSF TARSGYSVCT TTTTATNAAL PNYMAITESA KARIRSQSAP RQRPSTPEKE RISSARKRLS FPVPPLPQQM DGQSLRSPSF KSIGGSQLGA
501: LEQQSNYSSC CTESLGGGGE ISPASTSDYR RWLR
Arabidopsis Description
iqd17IQ-domain 17 [Source:UniProtKB/TrEMBL;Acc:F4JHN2]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.