Factsheet for HORVU1Hr1G071700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G019530.1
HORVU5Hr1G032550.3
HORVU6Hr1G069310.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03040.1	HORVU6Hr1G069310.1	AT3G27960.1	21798944
AT5G03040.1	HORVU4Hr1G019530.1	AT4G09570.1	19130088
AT5G03040.1	HORVU5Hr1G032550.3	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G288100.2	Wheat	nucleus	84.05	82.92
TraesCS1D01G287100.2	Wheat	cytosol	83.85	81.47
TraesCS1B01G297500.1	Wheat	cytosol	82.88	80.68
Os05t0463300-00	Rice	plasma membrane	49.03	50.2
HORVU3Hr1G087500.2	Barley	cytosol	40.47	41.68
OQU78148	Sorghum	cytosol	45.33	41.61
Zm00001d038395_P005	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	45.72	36.15
PGSC0003DMT400004433	Potato	cytosol	33.46	35.83
VIT_08s0040g02360.t01	Wine grape	nucleus	33.07	35.49
Solyc09g007410.2.1	Tomato	cytosol	33.27	35.4
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	31.13	34.86
GSMUA_Achr7P22680_001	Banana	cytosol	31.32	34.62
HORVU1Hr1G013210.1	Barley	cytosol	32.3	34.3
KRG95941	Soybean	nucleus	31.52	33.96
KRH67648	Soybean	nucleus	31.52	33.96
Solyc10g084280.1.1	Tomato	nucleus	31.52	33.89
PGSC0003DMT400027139	Potato	cytosol	31.52	33.68
KRH19825	Soybean	cytosol	30.74	33.62
KRH32420	Soybean	cytosol	30.93	33.54
CDY11238	Canola	cytosol, plastid	26.85	33.41
GSMUA_Achr10P...	Banana	cytosol	27.43	33.41
PGSC0003DMT400045333	Potato	cytosol	30.16	32.91
CDX80849	Canola	cytosol, plastid	26.85	32.39
Solyc10g086060.1.1	Tomato	cytosol	29.38	32.06
CDY04876	Canola	nucleus, plastid	27.24	31.46
CDY55696	Canola	nucleus, plastid	26.65	31.35
CDY10410	Canola	cytosol, plastid	26.85	31.08
Bra028854.1-P	Field mustard	nucleus, plastid	26.85	31.01
AT5G03040.1	Thale cress	cytosol, plastid	27.24	30.37
GSMUA_Achr11P...	Banana	mitochondrion	26.07	29.0
Bra009554.1-P	Field mustard	cytosol	26.46	28.87
CDX70333	Canola	cytosol	26.85	28.75
AT3G09710.2	Thale cress	nucleus	24.12	26.5
Bra034081.1-P	Field mustard	nucleus	21.98	25.45
HORVU3Hr1G117830.2	Barley	endoplasmic reticulum, extracellular	28.6	25.17
Bra001299.1-P	Field mustard	nucleus	21.4	23.26
CDX73992	Canola	nucleus	21.21	22.85
HORVU7Hr1G023980.1	Barley	nucleus	14.4	22.63
CDY07937	Canola	nucleus	20.23	21.76
CDY22198	Canola	cytosol	23.54	21.65
HORVU7Hr1G075720.1	Barley	plasma membrane	22.57	21.25
HORVU5Hr1G007780.1	Barley	cytosol	17.7	21.21
HORVU3Hr1G066840.2	Barley	cytosol	17.51	21.13
CDY41307	Canola	cytosol	22.18	20.84
HORVU7Hr1G024060.1	Barley	plastid	7.0	20.45
HORVU1Hr1G079590.12	Barley	cytosol	17.32	19.02
HORVU3Hr1G019240.2	Barley	mitochondrion, peroxisome	18.29	18.99
HORVU5Hr1G092660.2	Barley	nucleus	16.15	18.95
HORVU3Hr1G089690.1	Barley	cytosol	21.4	17.52

Protein Annotations

EnsemblPlants:HORVU1Hr1G071700.1	EnsemblPlantsGene:HORVU1Hr1G071700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048
InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF6	PFAM:PF00612	PFscan:PS50096	SEG:seg
SMART:SM00015	UniParc:UPI000B480FE9	UniProt:A0A287G5S4	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr1H:-:494487899..494490653

Molecular Weight (calculated)

55933.8 Da

IEP (calculated)

11.320

GRAVY (calculated)

-0.932

Length

514 amino acids

Sequence
(BLAST)

001: MGKKVRWFDA VQRILSTSGP DREDKEEKQK PAERLTTRSS FKKLWHFGKS STSTSTTPET AHQHPGQQEA VVVAGDKSVG TTSEQNDGGF HVAPVAQQPA
101: EATAIVMPRA PARSKEELAA VRIQTACRGY LVRRGYQTRA QARLMSLLEG VAVKRQTEEA LYSMQAMTRV QTQIYARRVK KEKDLKSQVQ PKQGPDKTKI
201: GEGWDPTHHS KEQIEATLAT KQEAASRRQR ALSYAFSHQW RNRSPSSSSS GRGRVTPTQS HPPTFMDPGC PNWGWSWAER WTAAARPWES QTATQDKDRP
301: APAKGAKPRV SISVHIPTTP TGRSPRPPGR QSPSTPTRPL SPSVMGKTVA SPRRAPSPRG SPFNRSGSVL SERPRTSQEH PGASSGGGGD EKEASLRRTT
401: SLRSGELPRS LSLGVRDVDA DETGGAPVTP SYMQATKSVK AKARCASPAA ADRAELPERA PLVSSPSMKK RPSLELAEKQ GVSSPRTPRT PGTPSTPGKA
501: KAEIRAKRPP SPRF

Best Arabidopsis Sequence Match ( AT5G03040.1 )
(BLAST)

001: MGKKAKWFSS VKKAFSPDSK KSKQKLAEGQ NGVISNPPVV DNVRQSSSSP PPALAPREVR VAEVIVERNR DLSPPSTADA VNVTATDVPV VPSSSAPGVV
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S

Arabidopsis Description

iqd2At5g03040/F15A17_70 [Source:UniProtKB/TrEMBL;Acc:Q93ZH7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.