Factsheet for HORVU1Hr1G013210.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G019530.1
HORVU5Hr1G032550.3
HORVU6Hr1G069310.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03040.1	HORVU6Hr1G069310.1	AT3G27960.1	21798944
AT5G03040.1	HORVU4Hr1G019530.1	AT4G09570.1	19130088
AT5G03040.1	HORVU5Hr1G032550.3	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G064100.1	Wheat	cytosol	96.9	97.71
TraesCS1D01G064700.1	Wheat	cytosol	96.49	97.7
TraesCS1B01G082100.1	Wheat	cytosol	96.28	97.08
Os05t0123200-01	Rice	plasma membrane	83.47	85.23
KXG21175	Sorghum	cytosol	79.13	80.97
Zm00001d035492_P009	Maize	cytosol	78.31	79.62
Zm00001d010975_P003	Maize	cytosol	76.45	77.41
GSMUA_Achr3P17820_001	Banana	cytosol	61.78	62.55
GSMUA_Achr10P...	Banana	nucleus	56.82	61.11
VIT_08s0040g02360.t01	Wine grape	nucleus	55.58	56.16
GSMUA_Achr7P18240_001	Banana	cytosol	53.51	54.87
Solyc10g084280.1.1	Tomato	nucleus	52.48	53.14
KRG95941	Soybean	nucleus	52.27	53.04
KRH67648	Soybean	nucleus	52.27	53.04
PGSC0003DMT400027139	Potato	cytosol	52.27	52.6
CDY11238	Canola	cytosol, plastid	44.21	51.82
KRH32420	Soybean	cytosol	50.41	51.48
PGSC0003DMT400004433	Potato	cytosol	51.03	51.46
KRH19825	Soybean	cytosol	49.59	51.06
Solyc10g086060.1.1	Tomato	cytosol	49.59	50.96
Solyc09g007410.2.1	Tomato	cytosol	50.83	50.93
PGSC0003DMT400045333	Potato	cytosol	49.38	50.74
CDX80849	Canola	cytosol, plastid	44.42	50.47
HORVU3Hr1G117830.2	Barley	endoplasmic reticulum, extracellular	58.47	48.46
HORVU3Hr1G087500.2	Barley	cytosol	49.38	47.9
AT5G03040.1	Thale cress	cytosol, plastid	45.45	47.72
CDY10410	Canola	cytosol, plastid	43.59	47.52
CDY04876	Canola	nucleus, plastid	43.39	47.19
CDY55696	Canola	nucleus, plastid	42.56	47.14
Bra028854.1-P	Field mustard	nucleus, plastid	43.18	46.97
Bra009554.1-P	Field mustard	cytosol	41.94	43.1
CDX70333	Canola	cytosol	42.56	42.92
AT3G09710.2	Thale cress	nucleus	40.91	42.31
Bra034081.1-P	Field mustard	nucleus	36.78	40.09
Bra001299.1-P	Field mustard	nucleus	34.5	35.31
CDX73992	Canola	nucleus	34.71	35.22
CDY07937	Canola	nucleus	33.06	33.47
CDY22198	Canola	cytosol	38.43	33.27
CDY41307	Canola	cytosol	37.4	33.09
HORVU1Hr1G071700.1	Barley	nucleus	34.3	32.3
HORVU7Hr1G075720.1	Barley	plasma membrane	30.79	27.29
HORVU7Hr1G024060.1	Barley	plastid	9.92	27.27
HORVU3Hr1G066840.2	Barley	cytosol	22.73	25.82
HORVU7Hr1G023980.1	Barley	nucleus	17.36	25.69
HORVU5Hr1G007780.1	Barley	cytosol	21.49	24.24
HORVU3Hr1G019240.2	Barley	mitochondrion, peroxisome	24.59	24.04
HORVU5Hr1G092660.2	Barley	nucleus	20.66	22.83
HORVU1Hr1G079590.12	Barley	cytosol	20.66	21.37
HORVU3Hr1G089690.1	Barley	cytosol	27.48	21.18

Protein Annotations

EMBL:AK353625	EMBL:AK361291	EnsemblPlants:HORVU1Hr1G013210.1	EnsemblPlantsGene:HORVU1Hr1G013210	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF89
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	SEG:seg	SMART:SM00015	UniParc:UPI0002004451
UniProt:F2CPS3	MapMan:35.1	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CPS3]

Coordinates

chrchr1H:+:34083562..34087925

Molecular Weight (calculated)

52914.0 Da

IEP (calculated)

10.770

GRAVY (calculated)

-0.723

Length

484 amino acids

Sequence
(BLAST)

001: MGKKGKWLGA VKKVFSPESK EKKEEKLRKK LAARDPSPPD LTPSTSLEVN VSMPPPPPAV PSPHQTEEVQ VRDVELELEL ELEQEQEQSK HVTVEAAPDA
101: PAQTSAALPP GVSREELAAI KIQTAFRGYL ARRALRALRG LVRLKSLVEG NSVKRQAAST LRCMQTLARV QSQIRSRRLK MSEENQALQR QLLLKQELDS
201: LRMGEHWDDT TQSKEKIEAS LISRQEAAIR RERALAYAFS HQWKSSSRSS NPMFVDPNNP HWGWSWLERW MAAKPSEAGR TGTGKESNID QGSVKSMSLN
301: LGEGEITKAF NRRGSKPDKS SPTTPKLTRP ASRLSPSTPT AKVTPIVVKK KPATPKNGLS QVDDDARSVL SVQSERPRRH SIATSTVRDD ESLASSPSVP
401: SYMAATKSAR AKSRLQGSPL IDSAETTPEK GGSVSIGSAK KRLSFPAGGA PPSPMRRHSG PPKVESMVKD IAVTPQPEAL AING

Best Arabidopsis Sequence Match ( AT5G03040.2 )
(BLAST)

001: MGKKAKWFSS VKKAFSPDSK KSKQKLAEGQ NGVISNPPVV DNVRQSSSSP PPALAPREVR VAEVIVERNR DLSPPSTADA VNVTATDVPV VPSSSAPGVV
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S

Arabidopsis Description

iqd2At5g03040/F15A17_70 [Source:UniProtKB/TrEMBL;Acc:Q93ZH7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.