Factsheet for Zm00001d010975_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d017793_P001
Zm00001d023560_P002
Zm00001d051589_P001
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03040.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT5G03040.1	Zm00001d051589_P001	AT3G27960.1	21798944
AT5G03040.1	Zm00001d004812_P002	AT4G09570.1	19130088
AT5G03040.1	Zm00001d023560_P002	AT4G09570.1	19130088
AT5G03040.1	Zm00001d053016_P002	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21175	Sorghum	cytosol	90.8	91.75
Zm00001d035492_P009	Maize	cytosol	89.33	89.71
Os05t0123200-01	Rice	plasma membrane	80.33	81.01
TraesCS1D01G064700.1	Wheat	cytosol	76.78	76.78
TraesCS1A01G064100.1	Wheat	cytosol	76.99	76.67
HORVU1Hr1G013210.1	Barley	cytosol	77.41	76.45
TraesCS1B01G082100.1	Wheat	cytosol	76.36	76.04
GSMUA_Achr10P...	Banana	nucleus	55.65	59.11
GSMUA_Achr3P17820_001	Banana	cytosol	59.0	59.0
KRH67648	Soybean	nucleus	52.3	52.41
VIT_08s0040g02360.t01	Wine grape	nucleus	52.51	52.4
KRG95941	Soybean	nucleus	52.09	52.2
GSMUA_Achr7P18240_001	Banana	cytosol	51.46	52.12
Solyc10g084280.1.1	Tomato	nucleus	51.46	51.46
PGSC0003DMT400027139	Potato	cytosol	51.26	50.94
CDY11238	Canola	cytosol, plastid	43.93	50.85
KRH19825	Soybean	cytosol	49.58	50.43
KRH32420	Soybean	cytosol	50.0	50.42
PGSC0003DMT400004433	Potato	cytosol	50.42	50.21
Solyc09g007410.2.1	Tomato	cytosol	50.0	49.48
CDX80849	Canola	cytosol, plastid	43.93	49.3
PGSC0003DMT400045333	Potato	cytosol	48.54	49.26
Solyc10g086060.1.1	Tomato	cytosol	48.54	49.26
CDY04876	Canola	nucleus, plastid	43.93	47.19
CDY10410	Canola	cytosol, plastid	43.72	47.07
Bra028854.1-P	Field mustard	nucleus, plastid	43.72	46.97
CDY55696	Canola	nucleus, plastid	42.68	46.68
AT5G03040.1	Thale cress	cytosol, plastid	44.98	46.64
Zm00001d042973_P007	Maize	cytosol	45.61	43.0
Bra009554.1-P	Field mustard	cytosol	42.05	42.68
CDX70333	Canola	cytosol	42.68	42.5
AT3G09710.2	Thale cress	nucleus	41.0	41.88
Bra034081.1-P	Field mustard	nucleus	37.03	39.86
Bra001299.1-P	Field mustard	nucleus	34.94	35.31
CDX73992	Canola	nucleus	34.94	35.01
CDY07937	Canola	nucleus	33.68	33.68
CDY41307	Canola	cytosol	37.45	32.72
CDY22198	Canola	cytosol	37.87	32.38
Zm00001d045305_P001	Maize	nucleus	19.87	28.36
Zm00001d039471_P001	Maize	cytosol	25.73	27.33
Zm00001d049684_P002	Maize	cytosol, mitochondrion	29.29	25.74
Zm00001d038861_P001	Maize	cytosol, plastid	23.01	25.64
Zm00001d043691_P001	Maize	mitochondrion	22.8	24.83
Zm00001d034366_P003	Maize	mitochondrion	23.01	24.61
Zm00001d038395_P005	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	32.43	23.85
Zm00001d033211_P002	Maize	cytosol	20.92	23.31
Zm00001d031098_P004	Maize	cytosol	24.27	22.97
Zm00001d012167_P001	Maize	cytosol	27.2	22.49
Zm00001d013112_P011	Maize	mitochondrion	23.43	22.22
Zm00001d009320_P001	Maize	nucleus	10.67	22.08

Protein Annotations

EnsemblPlants:Zm00001d010975_P003	EnsemblPlants:Zm00001d010975_T003	EnsemblPlantsGene:Zm00001d010975	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	ncoils:Coil	PANTHER:PTHR32295	PANTHER:PTHR32295:SF89
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	ProteinID:AQK95409.1	SEG:seg	SMART:SM00015
UniParc:UPI0008438F1E	UniProt:A0A1D6FVD8	MapMan:35.1	:	:	:

Description

IQ-domain 3

Coordinates

chr8:-:135640297..135643659

Molecular Weight (calculated)

52519.4 Da

IEP (calculated)

11.097

GRAVY (calculated)

-0.734

Length

478 amino acids

Sequence
(BLAST)

001: MWFRQGRVPV SMGKKGKWFG AVKKVFSPES KEKKEERLRR KSAASNPTPV DLTPSTSLEV NLSVPPPPAP PPVLHQAEEV GVPEAEQEQS KHVAVEEAPA
101: AAPAQASVLP PAVPTQELAA VKIQTAFRGY LARRALRALR GLVRLKSLVE GNSVKRQSAS TLRCMQTLSR VQSQISSRRA KMSEENQALQ RQLLLKQELE
201: NFRMGENWDD STQSKEQIEA SLISRQEAAI RRERALAYAF SHQWKSTSRS VNPMFVDPNN LQWGWSWLER WMAAKPWEGR NGADKESNID RGSVKSMSLN
301: LGEGEITKAF NRRDSKLEKP SPPTPRPARP TSRHSPLTPS ARVAPIPARR KFVTPKNGLS QVDDDARSVL SVQSERPRRH SIATSTVRDD ESLTSSPSLP
401: SYMVPTESAR AKSRLQGSAT ANGAETPEKG GSTGPAKKRL SFQGGTVSAS PMRRHSGPPK VEIAPPQPEA LVVNGGSK

Best Arabidopsis Sequence Match ( AT3G09710.1 )
(BLAST)

001: MVKKAKWLKN VKKAFSPDSK KLKHESVECQ DSVISYPVLI ATSRSSSPQF EVRVDEVNYE QKKNLYPPSS DSVTATVAHV LVDSPPSSPE SVHQAIVVNR
101: FAGKSKEEAA AILIQSTFRG HLARRESQVM RGQERLKLLM EGSVVQRQAA ITLKCMQTLS RVQSQIRSRR IRMSEENQAR HKQLLQKHAK ELGGLKNGGN
201: WNYSNQSKEQ VEAGMLHKYE ATMRRERALA YAFTHQQNLK SFSKTANPMF MDPSNPTWGW SWLERWMAGR PWESSEKEQN TTNNDNSSVK NSTNRNSQGG
301: ETAKSSNRNK LNSSTKPNTP SASSTATRNP RKKRPIPSSI KSKSSDDEAK SSERNRRPSI ARPSVSDDET LSSSTARRSS NLIPTTKSAR GKPKSQTSSR
401: VAVTTSTTEE SSILPEKAPA KKRLSTSASP APKPRRSSAP PKVEKGVLKA ERTP

Arabidopsis Description

IQD1IQ-domain 1 [Source:UniProtKB/TrEMBL;Acc:F4J1A4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.