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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:
  • cytosol 2
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, secretory
Any Predictor:cytosol, secretory
MultiLoc:cytosol
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d004812_P002
Zm00001d017793_P001
Zm00001d023560_P002
Zm00001d051589_P001
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G03040.1 Zm00001d017793_P001 AT3G27960.1 21798944
AT5G03040.1 Zm00001d051589_P001 AT3G27960.1 21798944
AT5G03040.1 Zm00001d004812_P002 AT4G09570.1 19130088
AT5G03040.1 Zm00001d023560_P002 AT4G09570.1 19130088
AT5G03040.1 Zm00001d053016_P002 AT4G09570.1 19130088
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU78148 Sorghum cytosol 64.0 74.29
Os05t0463300-00 Rice plasma membrane 37.38 48.41
TraesCS1B01G297500.1 Wheat cytosol 37.38 46.02
TraesCS1D01G287100.2 Wheat cytosol 37.38 45.94
HORVU1Hr1G071700.1 Barley nucleus 36.15 45.72
TraesCS1A01G288100.2 Wheat nucleus 36.46 45.49
Zm00001d042973_P007 Maize cytosol 28.0 35.9
GSMUA_Achr7P22680_001 Banana cytosol 24.77 34.62
GSMUA_Achr10P... Banana cytosol 22.0 33.89
PGSC0003DMT400004433 Potato cytosol 24.92 33.75
VIT_08s0040g02360.t01 Wine grape nucleus 24.77 33.61
Solyc09g007410.2.1 Tomato cytosol 24.92 33.54
GSMUA_AchrUn_... Banana mitochondrion, nucleus 23.54 33.33
KRH19825 Soybean cytosol 24.0 33.19
CDX80849 Canola cytosol, plastid 21.38 32.63
KRH32420 Soybean cytosol 23.69 32.49
CDY11238 Canola cytosol, plastid 20.62 32.45
Solyc10g084280.1.1 Tomato nucleus 23.85 32.43
Zm00001d010975_P003 Maize cytosol 23.85 32.43
KRG95941 Soybean nucleus 23.69 32.29
KRH67648 Soybean nucleus 23.69 32.29
Zm00001d035492_P009 Maize cytosol 23.54 32.14
PGSC0003DMT400027139 Potato cytosol 23.54 31.81
PGSC0003DMT400045333 Potato cytosol 22.92 31.63
GSMUA_Achr11P... Banana mitochondrion 22.46 31.6
Solyc10g086060.1.1 Tomato cytosol 22.46 31.0
AT5G03040.1 Thale cress cytosol, plastid 21.85 30.8
CDY04876 Canola nucleus, plastid 21.08 30.79
CDY55696 Canola nucleus, plastid 20.62 30.66
Bra028854.1-P Field mustard nucleus, plastid 20.92 30.56
CDY10410 Canola cytosol, plastid 20.77 30.41
CDX70333 Canola cytosol 21.69 29.38
Bra009554.1-P Field mustard cytosol 20.46 28.24
AT3G09710.2 Thale cress nucleus 20.31 28.21
Bra034081.1-P Field mustard nucleus 17.23 25.23
CDX73992 Canola nucleus 17.08 23.27
Bra001299.1-P Field mustard nucleus 16.77 23.04
Zm00001d038861_P001 Maize cytosol, plastid 14.92 22.61
CDY07937 Canola nucleus 16.15 21.97
Zm00001d043691_P001 Maize mitochondrion 14.31 21.18
CDY41307 Canola cytosol 17.69 21.02
CDY22198 Canola cytosol 17.85 20.75
Zm00001d049684_P002 Maize cytosol, mitochondrion 17.08 20.4
Zm00001d045305_P001 Maize nucleus 10.46 20.3
Zm00001d039471_P001 Maize cytosol 14.0 20.22
Zm00001d033211_P002 Maize cytosol 12.77 19.35
Zm00001d034366_P003 Maize mitochondrion 12.77 18.57
Zm00001d031098_P004 Maize cytosol 13.85 17.82
Zm00001d012167_P001 Maize cytosol 15.69 17.65
Zm00001d013112_P011 Maize mitochondrion 13.23 17.06
Zm00001d009320_P001 Maize nucleus 5.69 16.02
Protein Annotations
EnsemblPlants:Zm00001d038395_P005EnsemblPlants:Zm00001d038395_T005EnsemblPlantsGene:Zm00001d038395GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR000048InterPro:IQ_motif_EF-hand-BSncoils:CoilPANTHER:PTHR32295PANTHER:PTHR32295:SF6PFAM:PF00612
PFscan:PS50096ProteinID:AQK86538.1SEG:segSMART:SM00015UniParc:UPI0002212057UniProt:A0A1D6M636
MapMan:35.1:::::
Description
IQ-domain 3
Coordinates
chr6:-:156302472..156305201
Molecular Weight (calculated)
71501.2 Da
IEP (calculated)
10.651
GRAVY (calculated)
-0.813
Length
650 amino acids
Sequence
(BLAST)
001: MQLSPSSFMC LLYLFDHVFE RDPSCVYDPS SIPKRRGREM GRKGKWFDTV QRILITSEPD PVETQNDDAA KDWKLDHHEK AAKLRDNKSA IRRIWQFGKS
101: NSSGASASAT APEDAEVLQF PKSPRSDNEY HVVQDLTEEV PFMETRGEEE EEEDGERMNP GDEVAASPDS KADAAPMTAW SARSKEDIAA TRIQAACRGH
201: LARRGQQERG MARLMSLVDE GFAVRRQTQE ALYCMQMMTR IQTQLYTRRL KTEKDKKVLK SQTKAVNKHS LDKAKIGEGW DHSLQSKEQM ETVQKMKQEA
301: ATRRQRALSY AFSQQWRNRN TSSARAAHGP APMYMEPGNP NWGWCWAERW MAATRPWENQ TMPPPDTGRA ASKSASTRLP RVAVSVQIPT ATTTPKGKPF
401: RPPNWSSSSS LSSPSTPPPR RTATLASPRS GPLHATSGLQ HSKSLQPDHR RPRSSQELSA NSPRRAAVPA SPRCASGSSS PLHPSSGAGA QHATTTATMR
501: LERRPRSSQD RGMSSPRLLG AKDAPLRRTA SLRSELPIRL SLGSAVAAAA VGDDEGAPVT PSYIHPAKKS VRAKVRCPSP SAAAATPDMF DALESSPAPP
601: LQVPPSPSSA KKRLSQAFAD KPSASSPSKV ALERVRRHSQ LISSPRMSLS
Best Arabidopsis Sequence Match ( AT3G09710.1 )
(BLAST)
001: MVKKAKWLKN VKKAFSPDSK KLKHESVECQ DSVISYPVLI ATSRSSSPQF EVRVDEVNYE QKKNLYPPSS DSVTATVAHV LVDSPPSSPE SVHQAIVVNR
101: FAGKSKEEAA AILIQSTFRG HLARRESQVM RGQERLKLLM EGSVVQRQAA ITLKCMQTLS RVQSQIRSRR IRMSEENQAR HKQLLQKHAK ELGGLKNGGN
201: WNYSNQSKEQ VEAGMLHKYE ATMRRERALA YAFTHQQNLK SFSKTANPMF MDPSNPTWGW SWLERWMAGR PWESSEKEQN TTNNDNSSVK NSTNRNSQGG
301: ETAKSSNRNK LNSSTKPNTP SASSTATRNP RKKRPIPSSI KSKSSDDEAK SSERNRRPSI ARPSVSDDET LSSSTARRSS NLIPTTKSAR GKPKSQTSSR
401: VAVTTSTTEE SSILPEKAPA KKRLSTSASP APKPRRSSAP PKVEKGVLKA ERTP
Arabidopsis Description
IQD1IQ-domain 1 [Source:UniProtKB/TrEMBL;Acc:F4J1A4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.