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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G03040.1 TraesCS6A01G274500.1 AT3G27960.1 21798944
AT5G03040.1 TraesCS6B01G302000.1 AT3G27960.1 21798944
AT5G03040.1 TraesCS6D01G254800.1 AT3G27960.1 21798944
AT5G03040.1 TraesCS4A01G206200.2 AT4G09570.1 19130088
AT5G03040.1 TraesCS4B01G109800.2 AT4G09570.1 19130088
AT5G03040.1 TraesCS4D01G107200.1 AT4G09570.1 19130088
AT5G03040.1 TraesCS5A01G107900.1 AT4G09570.1 19130088
AT5G03040.1 TraesCS5B01G115400.1 AT4G09570.1 19130088
AT5G03040.1 TraesCS5D01G122800.1 AT4G09570.1 19130088
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G287100.2 Wheat cytosol 94.63 93.19
TraesCS1B01G297500.1 Wheat cytosol 90.98 89.77
HORVU1Hr1G071700.1 Barley nucleus 82.92 84.05
Os05t0463300-00 Rice plasma membrane 48.75 50.6
OQU78148 Sorghum cytosol 45.87 42.68
TraesCS3A01G352500.1 Wheat cytosol 39.16 40.88
Zm00001d038395_P005 Maize cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 45.49 36.46
VIT_08s0040g02360.t01 Wine grape nucleus 32.82 35.7
PGSC0003DMT400004433 Potato cytosol 32.82 35.62
GSMUA_AchrUn_... Banana mitochondrion, nucleus 31.09 35.29
Solyc09g007410.2.1 Tomato cytosol 32.25 34.78
KRG95941 Soybean nucleus 31.67 34.59
KRH19825 Soybean cytosol 31.09 34.47
GSMUA_Achr7P22680_001 Banana cytosol 30.71 34.41
KRH32420 Soybean cytosol 31.29 34.39
TraesCS1A01G064100.1 Wheat cytosol 31.67 34.38
KRH67648 Soybean nucleus 31.09 33.96
CDY11238 Canola cytosol, plastid 26.68 33.66
Solyc10g084280.1.1 Tomato nucleus 30.71 33.47
PGSC0003DMT400027139 Potato cytosol 30.9 33.47
GSMUA_Achr10P... Banana cytosol 26.87 33.18
PGSC0003DMT400045333 Potato cytosol 29.94 33.12
CDX80849 Canola cytosol, plastid 26.49 32.39
Solyc10g086060.1.1 Tomato cytosol 29.17 32.27
CDY04876 Canola nucleus, plastid 26.87 31.46
CDY10410 Canola cytosol, plastid 26.68 31.31
CDY55696 Canola nucleus, plastid 26.1 31.12
Bra028854.1-P Field mustard nucleus, plastid 26.49 31.01
AT5G03040.1 Thale cress cytosol, plastid 27.26 30.8
GSMUA_Achr11P... Banana mitochondrion 26.49 29.87
CDX70333 Canola cytosol 26.3 28.54
Bra009554.1-P Field mustard cytosol 25.72 28.45
TraesCS3A01G538100.1 Wheat cytosol, mitochondrion 27.64 27.12
AT3G09710.2 Thale cress nucleus 23.22 25.85
Bra034081.1-P Field mustard nucleus 21.69 25.45
Bra001299.1-P Field mustard nucleus 20.54 22.62
CDX73992 Canola nucleus 20.54 22.43
TraesCS1A01G362400.1 Wheat mitochondrion 17.47 22.25
TraesCS7A01G317400.2 Wheat nucleus 23.22 22.24
TraesCS7A01G112000.1 Wheat nucleus 13.82 22.02
CDY07937 Canola nucleus 19.77 21.55
CDY22198 Canola cytosol 23.03 21.47
TraesCS3A01G251400.1 Wheat cytosol 17.66 21.35
TraesCS3A01G105600.1 Wheat cytosol, nucleus, peroxisome 17.47 20.78
CDY41307 Canola cytosol 21.69 20.66
TraesCS5A01G425800.1 Wheat cytosol, mitochondrion 16.31 19.77
TraesCS5A01G029600.3 Wheat nucleus 16.31 19.59
TraesCS5A01G373000.1 Wheat nucleus 14.78 17.66
TraesCS3A01G398900.1 Wheat cytosol 19.96 16.69
Protein Annotations
EnsemblPlants:TraesCS1A01G288100.2EnsemblPlantsGene:TraesCS1A01G288100GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR000048
InterPro:IQ_motif_EF-hand-BSPANTHER:PTHR32295PANTHER:PTHR32295:SF6PFAM:PF00612PFscan:PS50096SEG:seg
SMART:SM00015MapMan:35.1::::
Description
No Description!
Coordinates
chr1A:-:485338075..485340056
Molecular Weight (calculated)
56331.2 Da
IEP (calculated)
11.239
GRAVY (calculated)
-0.938
Length
521 amino acids
Sequence
(BLAST)
001: MGKKVRWFDA VHRILSPSEP DRDEKEDKQK PAERPTSKSS FKKLWQFGKS STSTSSSSAA HQQPPPQPDQ QDAAEAKSTG TTSEQNNGGF QVAALAAPVA
101: QQPAEATAVV TPRAPARSRE ELAAVRIQTA CRGYLVRKGY KARAQARLMS LLEGVAVKRQ TEDALYSMQM MTRVQTQIYA RRVNKDKALK SQVQPKQGPD
201: KTKTGEVWDH THQSKEQIEA TLATKQEAAS RRQKALSYAF SHQWRNKSPS SSSSSGRGRV TPTLSHPPTF MDPGCPNWGW SWAERCLAAS RPWESQTAPP
301: DVKDRAAPAK SVGRAASPRV SISVHIPTTP TGRSARPAGR SSPSTPTQSR SPSALGKTVA SPRRAPSPRG SPFNKSGSML SERPRSSQEH MGASSGGGGD
401: EKEASLRRTT SLRSGEQPRK LSLGTREVDA GETGDAPVTP SYMQATKSVK AKARCASPAA ADKAELPERA PLVSSPSMKR RPSPEFADKQ GVSSPRTPRT
501: PSTPGKAKPE IRMKRPPSPR L
Best Arabidopsis Sequence Match ( AT3G52290.1 )
(BLAST)
001: MGKSWFSAVK KALSPEPKQK KEQKPHKSKK WFGKSKKLDV TNSGAAYSPR TVKDAKLKEI EEQQSRHAYS VAIATAAAAE AAVAAAQAAA EVVRLSALSR
101: FPGKSMEEIA AIKIQTAFRG YMARRALRAL RGLVRLKSLV QGKCVRRQAT STLQSMQTLA RVQYQIRERR LRLSEDKQAL TRQLQQKHNK DFDKTGENWN
201: DSTLSREKVE ANMLNKQVAT MRREKALAYA FSHQNTWKNS TKMGSQTFMD PNNPHWGWSW LERWMAARPN ENHSLTPDNA EKDSSARSVA SRAMSEMIPR
301: GKNLSPRGKT PNSRRGSSPR VRQVPSEDSN SIVSFQSEQP CNRRHSTCGS IPSTRDDESF TSSFSQSVPG YMAPTQAAKA RARFSNLSPL SSEKTAKKRL
401: SFSGSPKTVR RFSGPPKLES NVTKKDTNLA
Arabidopsis Description
IQD3IQD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCT8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.