Factsheet for Bra001299.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73992	Canola	nucleus	92.18	91.4
Bra034081.1-P	Field mustard	nucleus	65.12	69.37
AT3G09710.2	Thale cress	nucleus	63.0	63.68
Bra028854.1-P	Field mustard	nucleus, plastid	47.36	50.34
Bra009554.1-P	Field mustard	cytosol	46.3	46.5
KRG95941	Soybean	nucleus	41.01	40.67
KRH67648	Soybean	nucleus	39.75	39.41
VIT_08s0040g02360.t01	Wine grape	nucleus	39.53	39.04
KRH19825	Soybean	cytosol	38.48	38.72
KRH32420	Soybean	cytosol	38.27	38.19
KXG21175	Sorghum	cytosol	36.15	36.15
GSMUA_Achr10P...	Banana	nucleus	34.25	36.0
PGSC0003DMT400004433	Potato	cytosol	36.36	35.83
Zm00001d035492_P009	Maize	cytosol	35.94	35.71
GSMUA_Achr3P17820_001	Banana	cytosol	35.94	35.56
Solyc10g084280.1.1	Tomato	nucleus	35.94	35.56
PGSC0003DMT400045333	Potato	cytosol	35.31	35.46
Solyc10g086060.1.1	Tomato	cytosol	35.31	35.46
Os05t0123200-01	Rice	plasma membrane	35.31	35.23
PGSC0003DMT400027139	Potato	cytosol	35.73	35.14
TraesCS1A01G064100.1	Wheat	cytosol	35.52	35.0
Zm00001d010975_P003	Maize	cytosol	35.31	34.94
TraesCS1D01G064700.1	Wheat	cytosol	35.31	34.94
TraesCS1B01G082100.1	Wheat	cytosol	35.31	34.79
Solyc09g007410.2.1	Tomato	cytosol	35.52	34.78
HORVU1Hr1G013210.1	Barley	cytosol	35.31	34.5
GSMUA_Achr7P18240_001	Banana	cytosol	34.04	34.11
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	31.71	32.68
Bra033443.1-P	Field mustard	cytosol	30.66	32.58
GSMUA_Achr7P22680_001	Banana	cytosol	30.23	30.75
GSMUA_Achr10P...	Banana	cytosol	27.27	30.57
TraesCS3D01G543500.1	Wheat	cytosol	31.92	30.44
TraesCS3B01G603500.1	Wheat	cytosol, mitochondrion	31.92	28.71
TraesCS3A01G352500.1	Wheat	cytosol	30.23	28.66
HORVU3Hr1G087500.2	Barley	cytosol	30.23	28.66
TraesCS3B01G385100.1	Wheat	cytosol	30.23	28.66
TraesCS3D01G346500.1	Wheat	cytosol	30.23	28.66
Os01t0833800-01	Rice	plasma membrane	30.02	28.4
KXG33651	Sorghum	cytosol	29.6	28.11
TraesCS3A01G538100.1	Wheat	cytosol, mitochondrion	31.5	28.06
Bra005462.1-P	Field mustard	cytosol, plastid	15.43	27.55
Zm00001d042973_P007	Maize	cytosol	29.18	27.22
GSMUA_Achr11P...	Banana	mitochondrion	25.79	26.41
HORVU3Hr1G117830.2	Barley	endoplasmic reticulum, extracellular	31.71	25.68
Bra021888.1-P	Field mustard	plastid	13.11	23.94
Bra031331.1-P	Field mustard	cytosol	18.39	22.66
Bra021588.1-P	Field mustard	cytosol, plastid	12.47	22.35
Bra034294.1-P	Field mustard	nucleus	18.18	21.66
HORVU1Hr1G071700.1	Barley	nucleus	23.26	21.4
OQU78148	Sorghum	cytosol	24.95	21.07
TraesCS1D01G287100.2	Wheat	cytosol	23.26	20.79
TraesCS1A01G288100.2	Wheat	nucleus	22.62	20.54
Os05t0463300-00	Rice	plasma membrane	21.56	20.32
TraesCS1B01G297500.1	Wheat	cytosol	21.78	19.51
Bra001855.1-P	Field mustard	cytosol	13.53	18.66
Bra000717.1-P	Field mustard	nucleus	16.7	18.29
Bra007471.1-P	Field mustard	nucleus	18.39	17.54
Bra017988.1-P	Field mustard	nucleus	12.47	16.86
Zm00001d038395_P005	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	23.04	16.77
Bra017997.1-P	Field mustard	nucleus, plastid	16.7	16.63
Bra023846.1-P	Field mustard	cytosol	14.59	16.55
Bra016042.1-P	Field mustard	cytosol	14.38	16.5
Bra025971.1-P	Field mustard	nucleus	12.9	16.27
Bra033284.1-P	Field mustard	nucleus	17.97	16.16
Bra000930.1-P	Field mustard	mitochondrion, nucleus	17.34	15.62
Bra019589.1-P	Field mustard	nucleus	15.43	15.37
Bra037689.1-P	Field mustard	cytosol	16.7	14.99
Bra000318.1-P	Field mustard	nucleus	17.76	14.12
Bra004776.1-P	Field mustard	nucleus	17.55	13.28

Protein Annotations

EMBL:FJ584286	EnsemblPlants:Bra001299.1	EnsemblPlants:Bra001299.1-P	EnsemblPlantsGene:Bra001299	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF28	PFAM:PF00612
PFscan:PS50096	ProteinID:ACR48177	ProteinID:ACR48177.1	SEG:seg	SMART:SM00015	UniParc:UPI0002540550
UniProt:M4CAS0	MapMan:35.1	:	:	:	:

Description

AT3G09710 (E=6e-108) IQD1 | IQD1 (IQ-DOMAIN 1); calmodulin binding

Coordinates

chrA03:+:15749065..15751124

Molecular Weight (calculated)

53069.0 Da

IEP (calculated)

11.243

GRAVY (calculated)

-1.021

Length

473 amino acids

Sequence
(BLAST)

001: MVKKAKWLEN VKKAFSPDVK KLKHQSVEES VISYPVLVAR SRSSPPQFEV RVDEVNYEHR KKKNLSPPPS EEQENVLGDS TPESVPPPVA PDRFAGEEAA
101: AIFIQSTFRG HLARREALRM RRWARLKLLM EGLVVQRQAA NTLRSMQTFT RMQSKIRSMR IRMAEENQGR HKQLLQKHAK ELRGSKNGVN NQSKKQVEAG
201: LLNKNEAATM RKERALAYAS THQQHLKSNL KHTYTMFMDP NNLTWGWSWL ERWTADKESS EKEQTNTVKP AVKTSTNRSS HRGETTKSSN SKKLNSSTQP
301: NTTSTSSSST TSNPRKNKPN PPAIRPKTTD EITKSSDKNR RHSIARSSVS DDEGLARRRN MVPTKPAEEI PKSSEKNRSR HIIARSSVSD DEGLASSVAR
401: RSNMVPTKPA RVNLKAQSSA AATKATKEES NDVLREKAPA AKKRVSPAPK PRRSTAPPKV ENSVLKAVKT PCA

Best Arabidopsis Sequence Match ( AT3G09710.1 )
(BLAST)

001: MVKKAKWLKN VKKAFSPDSK KLKHESVECQ DSVISYPVLI ATSRSSSPQF EVRVDEVNYE QKKNLYPPSS DSVTATVAHV LVDSPPSSPE SVHQAIVVNR
101: FAGKSKEEAA AILIQSTFRG HLARRESQVM RGQERLKLLM EGSVVQRQAA ITLKCMQTLS RVQSQIRSRR IRMSEENQAR HKQLLQKHAK ELGGLKNGGN
201: WNYSNQSKEQ VEAGMLHKYE ATMRRERALA YAFTHQQNLK SFSKTANPMF MDPSNPTWGW SWLERWMAGR PWESSEKEQN TTNNDNSSVK NSTNRNSQGG
301: ETAKSSNRNK LNSSTKPNTP SASSTATRNP RKKRPIPSSI KSKSSDDEAK SSERNRRPSI ARPSVSDDET LSSSTARRSS NLIPTTKSAR GKPKSQTSSR
401: VAVTTSTTEE SSILPEKAPA KKRLSTSASP APKPRRSSAP PKVEKGVLKA ERTP

Arabidopsis Description

IQD1IQ-domain 1 [Source:UniProtKB/TrEMBL;Acc:F4J1A4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.