Factsheet for TraesCS3B01G603500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03040.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT5G03040.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT5G03040.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT5G03040.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT5G03040.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT5G03040.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT5G03040.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT5G03040.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT5G03040.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G543500.1	Wheat	cytosol	86.5	91.73
TraesCS3A01G538100.1	Wheat	cytosol, mitochondrion	90.68	89.83
HORVU3Hr1G117830.2	Barley	endoplasmic reticulum, extracellular	85.93	77.4
TraesCS1B01G082100.1	Wheat	cytosol	52.85	57.92
GSMUA_Achr10P...	Banana	nucleus	44.49	52.0
GSMUA_Achr3P17820_001	Banana	cytosol	46.77	51.46
VIT_08s0040g02360.t01	Wine grape	nucleus	45.25	49.69
KRG95941	Soybean	nucleus	44.68	49.27
KRH67648	Soybean	nucleus	44.3	48.85
Solyc09g007410.2.1	Tomato	cytosol	43.16	47.0
CDY11238	Canola	cytosol, plastid	36.88	46.97
PGSC0003DMT400004433	Potato	cytosol	42.78	46.88
PGSC0003DMT400027139	Potato	cytosol	42.78	46.78
Solyc10g086060.1.1	Tomato	cytosol	41.63	46.5
Solyc10g084280.1.1	Tomato	nucleus	42.21	46.44
CDX80849	Canola	cytosol, plastid	37.26	46.01
PGSC0003DMT400045333	Potato	cytosol	41.06	45.86
KRH19825	Soybean	cytosol	40.87	45.74
KRH32420	Soybean	cytosol	41.06	45.57
GSMUA_Achr7P18240_001	Banana	cytosol	40.68	45.34
CDY55696	Canola	nucleus, plastid	36.69	44.16
CDY04876	Canola	nucleus, plastid	37.07	43.82
AT5G03040.1	Thale cress	cytosol, plastid	38.4	43.82
Bra028854.1-P	Field mustard	nucleus, plastid	36.88	43.6
CDY10410	Canola	cytosol, plastid	36.69	43.47
TraesCS3B01G385100.1	Wheat	cytosol	39.54	41.68
Bra009554.1-P	Field mustard	cytosol	35.74	39.92
CDX70333	Canola	cytosol	36.31	39.79
AT3G09710.2	Thale cress	nucleus	34.6	38.89
Bra034081.1-P	Field mustard	nucleus	30.23	35.81
Bra001299.1-P	Field mustard	nucleus	28.71	31.92
CDX73992	Canola	nucleus	28.9	31.87
CDY07937	Canola	nucleus	27.95	30.75
CDY22198	Canola	cytosol	31.94	30.05
CDY41307	Canola	cytosol	30.99	29.8
TraesCS1B01G297500.1	Wheat	cytosol	27.0	26.89
TraesCS7B01G218800.3	Wheat	nucleus	27.76	26.79
TraesCS3B01G124000.1	Wheat	cytosol	21.29	25.81
TraesCS5B01G427800.1	Wheat	cytosol, mitochondrion	20.72	25.35
TraesCS7B01G010100.1	Wheat	nucleus	15.4	24.77
TraesCS3B01G280900.1	Wheat	cytosol	19.77	24.19
TraesCS5B01G028200.1	Wheat	nucleus	19.77	23.48
TraesCS1B01G379600.1	Wheat	mitochondrion	18.44	23.32
TraesCS5B01G375000.1	Wheat	nucleus	18.63	22.48
TraesCS3B01G431200.1	Wheat	cytosol	23.19	19.49

Protein Annotations

EnsemblPlants:TraesCS3B01G603500.1	EnsemblPlantsGene:TraesCS3B01G603500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:DUF4005
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF89	PFAM:PF00612	PFAM:PF13178
PFscan:PS50096	SEG:seg	SMART:SM00015	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3B:+:822903506..822907574

Molecular Weight (calculated)

56244.0 Da

IEP (calculated)

11.001

GRAVY (calculated)

-0.671

Length

526 amino acids

Sequence
(BLAST)

001: MGKKPRWLGA VKKAFSPESK DQKLQRRLAA AGTSTSSSAP YPRDLTPSAS YLQARASGSG SALPRYPDDF PEASLPPPAP APAPLPVTET QTQTQTQREE
101: HEIEHVAAEP PTATDAPLPA PAPAAAPPQV QAQAAAVPAA SSSPILSREL AATKIQTAFR GHLARRALRA LKGLVRLKSL VQGHSVKRQA TSTLRCMQTL
201: SRVQSKIRTR RIKMAEQNQA LQRQLLLNQE LETLRMGDQW NTSLQSKEQI EASLVSRQEA AARRERALAY AFSHQWKSTS RSANPMFVDP SNPHWGWSWL
301: ERWMASRPFD GRNGASEKDG SSVDRTSVNS TSLSMNLGEV ETITKDDNQV VDSLKPNDDK PAPFSTPKPS GPAPRQSPST PSPAVLARKK SAAPKSGDDG
401: DDARSVVSAV RSERPRRHSI GASSVRDDAS LSGSSPSVPS YMAATKSASA RAKLRVQSPT LTEGAAHAET LEKGWSSVGS AKKRLSFPAG TPPPVPSAAA
501: RRHSGPPKVR QAAVEGGTEG RDSALV

Best Arabidopsis Sequence Match ( AT5G03040.2 )
(BLAST)

001: MGKKAKWFSS VKKAFSPDSK KSKQKLAEGQ NGVISNPPVV DNVRQSSSSP PPALAPREVR VAEVIVERNR DLSPPSTADA VNVTATDVPV VPSSSAPGVV
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S

Arabidopsis Description

iqd2At5g03040/F15A17_70 [Source:UniProtKB/TrEMBL;Acc:Q93ZH7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.