Factsheet for TraesCS3D01G543500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03040.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT5G03040.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT5G03040.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT5G03040.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT5G03040.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT5G03040.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT5G03040.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT5G03040.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT5G03040.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G603500.1	Wheat	cytosol, mitochondrion	91.73	86.5
TraesCS3A01G538100.1	Wheat	cytosol, mitochondrion	91.73	85.69
HORVU3Hr1G117830.2	Barley	endoplasmic reticulum, extracellular	86.09	73.12
TraesCS1D01G064700.1	Wheat	cytosol	56.25	58.37
GSMUA_Achr10P...	Banana	nucleus	47.78	52.67
GSMUA_Achr3P17820_001	Banana	cytosol	49.4	51.26
VIT_08s0040g02360.t01	Wine grape	nucleus	47.58	49.27
KRG95941	Soybean	nucleus	47.18	49.06
KRH67648	Soybean	nucleus	46.77	48.64
PGSC0003DMT400027139	Potato	cytosol	45.56	46.99
CDY11238	Canola	cytosol, plastid	39.11	46.97
Solyc10g084280.1.1	Tomato	nucleus	45.16	46.86
Solyc10g086060.1.1	Tomato	cytosol	44.35	46.71
Solyc09g007410.2.1	Tomato	cytosol	45.36	46.58
PGSC0003DMT400004433	Potato	cytosol	44.96	46.46
PGSC0003DMT400045333	Potato	cytosol	43.75	46.07
KRH32420	Soybean	cytosol	43.75	45.78
CDX80849	Canola	cytosol, plastid	39.31	45.77
KRH19825	Soybean	cytosol	43.35	45.74
GSMUA_Achr7P18240_001	Banana	cytosol	42.74	44.92
CDY55696	Canola	nucleus, plastid	39.52	44.85
AT5G03040.1	Thale cress	cytosol, plastid	41.33	44.47
CDY04876	Canola	nucleus, plastid	39.52	44.04
Bra028854.1-P	Field mustard	nucleus, plastid	39.31	43.82
CDY10410	Canola	cytosol, plastid	39.11	43.69
TraesCS3D01G346500.1	Wheat	cytosol	42.54	42.28
Bra009554.1-P	Field mustard	cytosol	37.7	39.7
CDX70333	Canola	cytosol	38.31	39.58
AT3G09710.2	Thale cress	nucleus	36.9	39.1
Bra034081.1-P	Field mustard	nucleus	32.46	36.26
CDX73992	Canola	nucleus	30.85	32.08
Bra001299.1-P	Field mustard	nucleus	30.44	31.92
CDY07937	Canola	nucleus	29.84	30.96
CDY41307	Canola	cytosol	33.06	29.98
CDY22198	Canola	cytosol	33.67	29.87
TraesCS1D01G287100.2	Wheat	cytosol	30.04	28.17
TraesCS3D01G107700.1	Wheat	cytosol	22.98	26.21
TraesCS7D01G107600.2	Wheat	nucleus	16.73	25.38
TraesCS5D01G037300.2	Wheat	nucleus	21.37	24.65
TraesCS3D01G251800.2	Wheat	cytosol	21.17	23.7
TraesCS5D01G382500.1	Wheat	nucleus	19.96	22.6
TraesCS1D01G367300.2	Wheat	mitochondrion, plastid	19.76	21.73
TraesCS3D01G392900.1	Wheat	cytosol	23.99	19.13

Protein Annotations

EnsemblPlants:TraesCS3D01G543500.1	EnsemblPlantsGene:TraesCS3D01G543500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:DUF4005
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF89	PFAM:PF00612	PFAM:PF13178
PFscan:PS50096	SEG:seg	SMART:SM00015	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3D:+:613703732..613707285

Molecular Weight (calculated)

53104.4 Da

IEP (calculated)

10.825

GRAVY (calculated)

-0.702

Length

496 amino acids

Sequence
(BLAST)

001: MGKKPKWLGA VKKAFSPESK DQQKLQRRLA AAGSSAGAAY PRDLTPSASY LEARASGSAP PPALPRYPDD FQEEEHEIEH VAAAPAPAPA TDAPLPAPPA
101: AAPPQVQAAI APASSSCVMS RELAATKIQT AFRGHLARRA LRALKGLVRL KSLVQGHSVK RQATSTLRCM QTLSRVQSKI RTRRIKMAEE NQALQRQLLL
201: NQELETLRMG DQWNTSLQSK EQIEASLVSR QEAAARRERA LAYAFSHQWK STSRSANPMF VDPSNPHWGW SWLERWMASR PFDGRNGASE KEGSSVDRTS
301: VHSTSLSMNL GEGETVTKAD NQVVDSLKPN DDKPPPLSTP KPSGPAPRQS PSTPSPALAR KKSATPKSGD CDGDDARSVV STVRSERPRR HSIGASSVRD
401: DAGSSPSVPS YMAATKSASA RAKSRVQSPT LTEGAAQAET LEKGWSSVGS AKKRLSFPAG TPPPVPAAAA RRHSGPPKVR QAGVEGGTEE RDSSLA

Best Arabidopsis Sequence Match ( AT3G09710.1 )
(BLAST)

001: MVKKAKWLKN VKKAFSPDSK KLKHESVECQ DSVISYPVLI ATSRSSSPQF EVRVDEVNYE QKKNLYPPSS DSVTATVAHV LVDSPPSSPE SVHQAIVVNR
101: FAGKSKEEAA AILIQSTFRG HLARRESQVM RGQERLKLLM EGSVVQRQAA ITLKCMQTLS RVQSQIRSRR IRMSEENQAR HKQLLQKHAK ELGGLKNGGN
201: WNYSNQSKEQ VEAGMLHKYE ATMRRERALA YAFTHQQNLK SFSKTANPMF MDPSNPTWGW SWLERWMAGR PWESSEKEQN TTNNDNSSVK NSTNRNSQGG
301: ETAKSSNRNK LNSSTKPNTP SASSTATRNP RKKRPIPSSI KSKSSDDEAK SSERNRRPSI ARPSVSDDET LSSSTARRSS NLIPTTKSAR GKPKSQTSSR
401: VAVTTSTTEE SSILPEKAPA KKRLSTSASP APKPRRSSAP PKVEKGVLKA ERTP

Arabidopsis Description

IQD1IQ-domain 1 [Source:UniProtKB/TrEMBL;Acc:F4J1A4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.