Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g086840.2.1 | |
| Solyc06g065380.2.1 | |
| Solyc11g018610.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G03040.1 | Solyc02g086840.2.1 | AT3G27960.1 | 21798944 |
| AT5G03040.1 | Solyc06g065380.2.1 | AT4G09570.1 | 19130088 |
| AT5G03040.1 | Solyc11g018610.1.1 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400027139 | Potato | cytosol | 98.54 | 97.92 |
| Solyc09g007410.2.1 | Tomato | cytosol | 80.75 | 79.92 |
| Solyc10g086060.1.1 | Tomato | cytosol | 73.64 | 74.73 |
| VIT_08s0040g02360.t01 | Wine grape | nucleus | 61.3 | 61.17 |
| Solyc04g050050.2.1 | Tomato | cytosol | 50.42 | 61.17 |
| KRG95941 | Soybean | nucleus | 60.04 | 60.17 |
| KRH67648 | Soybean | nucleus | 59.2 | 59.33 |
| KRH19825 | Soybean | cytosol | 56.69 | 57.66 |
| KRH32420 | Soybean | cytosol | 56.9 | 57.38 |
| GSMUA_Achr3P17820_001 | Banana | cytosol | 55.02 | 55.02 |
| GSMUA_Achr10P... | Banana | nucleus | 51.67 | 54.89 |
| CDY11238 | Canola | cytosol, plastid | 46.86 | 54.24 |
| Os05t0123200-01 | Rice | plasma membrane | 53.14 | 53.59 |
| GSMUA_Achr7P22680_001 | Banana | cytosol | 51.88 | 53.33 |
| TraesCS1D01G064700.1 | Wheat | cytosol | 52.93 | 52.93 |
| CDX80849 | Canola | cytosol, plastid | 46.86 | 52.58 |
| TraesCS1A01G064100.1 | Wheat | cytosol | 52.72 | 52.5 |
| HORVU1Hr1G013210.1 | Barley | cytosol | 53.14 | 52.48 |
| KXG21175 | Sorghum | cytosol | 51.46 | 52.01 |
| TraesCS1B01G082100.1 | Wheat | cytosol | 52.09 | 51.88 |
| Zm00001d035492_P009 | Maize | cytosol | 51.46 | 51.68 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 49.58 | 51.63 |
| Zm00001d010975_P003 | Maize | cytosol | 51.46 | 51.46 |
| CDY04876 | Canola | nucleus, plastid | 47.07 | 50.56 |
| AT5G03040.1 | Thale cress | cytosol, plastid | 48.74 | 50.54 |
| CDY10410 | Canola | cytosol, plastid | 46.86 | 50.45 |
| Bra028854.1-P | Field mustard | nucleus, plastid | 46.86 | 50.34 |
| CDY55696 | Canola | nucleus, plastid | 45.82 | 50.11 |
| HORVU3Hr1G087500.2 | Barley | cytosol | 50.63 | 48.5 |
| TraesCS3A01G352500.1 | Wheat | cytosol | 50.63 | 48.5 |
| TraesCS3D01G346500.1 | Wheat | cytosol | 50.63 | 48.5 |
| TraesCS3B01G385100.1 | Wheat | cytosol | 50.63 | 48.5 |
| Os01t0833800-01 | Rice | plasma membrane | 50.63 | 48.4 |
| GSMUA_Achr10P... | Banana | cytosol | 42.47 | 48.1 |
| KXG33651 | Sorghum | cytosol | 50.0 | 47.99 |
| Zm00001d042973_P007 | Maize | cytosol | 50.0 | 47.14 |
| GSMUA_Achr11P... | Banana | mitochondrion | 44.35 | 45.89 |
| GSMUA_Achr7P18240_001 | Banana | cytosol | 45.19 | 45.76 |
| Bra009554.1-P | Field mustard | cytosol | 44.98 | 45.65 |
| CDX70333 | Canola | cytosol | 45.82 | 45.62 |
| TraesCS3D01G543500.1 | Wheat | cytosol | 46.86 | 45.16 |
| TraesCS3B01G603500.1 | Wheat | cytosol, mitochondrion | 46.44 | 42.21 |
| AT3G09710.2 | Thale cress | nucleus | 41.21 | 42.09 |
| TraesCS3A01G538100.1 | Wheat | cytosol, mitochondrion | 46.65 | 42.0 |
| Bra034081.1-P | Field mustard | nucleus | 36.4 | 39.19 |
| HORVU3Hr1G117830.2 | Barley | endoplasmic reticulum, extracellular | 46.44 | 38.01 |
| Bra001299.1-P | Field mustard | nucleus | 35.56 | 35.94 |
| CDX73992 | Canola | nucleus | 34.52 | 34.59 |
| Solyc08g062940.2.1 | Tomato | cytosol | 22.18 | 34.3 |
| CDY07937 | Canola | nucleus | 33.89 | 33.89 |
| CDY22198 | Canola | cytosol | 38.08 | 32.56 |
| CDY41307 | Canola | cytosol | 36.82 | 32.18 |
| TraesCS1D01G287100.2 | Wheat | cytosol | 35.15 | 31.76 |
| HORVU1Hr1G071700.1 | Barley | nucleus | 33.89 | 31.52 |
| Os05t0463300-00 | Rice | plasma membrane | 33.05 | 31.47 |
| TraesCS1A01G288100.2 | Wheat | nucleus | 33.47 | 30.71 |
| TraesCS1B01G297500.1 | Wheat | cytosol | 33.47 | 30.3 |
| Solyc03g083100.2.1 | Tomato | nucleus | 29.5 | 30.06 |
| Solyc12g014130.1.1 | Tomato | nucleus | 15.9 | 29.12 |
| Solyc08g014280.2.1 | Tomato | cytosol | 32.64 | 28.94 |
| OQU78148 | Sorghum | cytosol | 33.89 | 28.93 |
| Solyc06g052010.1.1 | Tomato | cytosol | 23.85 | 28.72 |
| Solyc10g008790.2.1 | Tomato | cytosol | 18.2 | 28.62 |
| Solyc10g005000.2.1 | Tomato | nucleus | 22.8 | 27.66 |
| Solyc02g077260.2.1 | Tomato | nucleus | 17.36 | 27.48 |
| Solyc11g071840.1.1 | Tomato | cytosol | 25.73 | 27.46 |
| Solyc08g083240.2.1 | Tomato | nucleus | 26.15 | 25.56 |
| Zm00001d038395_P005 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 32.43 | 23.85 |
| Solyc03g121760.2.1 | Tomato | cytosol | 21.13 | 23.54 |
| Solyc06g053450.2.1 | Tomato | nucleus | 27.82 | 22.47 |
| Solyc01g009340.2.1 | Tomato | nucleus | 16.95 | 20.1 |
Protein Annotations
| EnsemblPlants:Solyc10g084280.1.1 | EnsemblPlantsGene:Solyc10g084280.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000048 |
| InterPro:IQ_motif_EF-hand-BS | ncoils:Coil | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF28 | PFAM:PF00612 | PFscan:PS50096 |
| SEG:seg | SMART:SM00015 | UniParc:UPI000276A262 | UniProt:K4D3L4 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr10:+:63899140..63901714
Molecular Weight (calculated)
52741.5 Da
IEP (calculated)
10.916
GRAVY (calculated)
-0.787
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKGSWFSS VKKALSPNSK EKKDGKSKKK WFGKEKQPLP DSSTLVVASV SPPQPIPQVE EVKLAEVEEE QTKHVYSVAV ATAAAAEAAV AAAQAAAEVV
101: RLTTVNQFPG KSKEEIAAIR IQTTFRGYLA RRALRALRGL VRLKTLVDGP TVKRQTANTL KCMQTLSRAQ SQISSRRSRL LEENRTLQRQ LMQKHAKELE
201: SLRRGEEWDD TLQSKEQIEA SLLGRYEAAM RRERALAYSY SHQQTWKKSS KATNLLFMDP TNPQWGWSWL ERWMGARSRE NQNMSEKELK GDQMSVRSAS
301: MSMSGGEITK AFARHQLNSE LPSSPLSQKP NRPSSRQSPT TPSKPSTARK PKPGSARVSA INQEDDTRSV FSVQSEMNRR HSIAGSSVRD DESLGSCSSV
401: PSYMASTQSA KARTTRLQSP LGVENGTPPA KGSAGSVKKR LSYSPSPAIT RRHSGPPKVE ITSTNTSNAE KYVNGVVN
101: RLTTVNQFPG KSKEEIAAIR IQTTFRGYLA RRALRALRGL VRLKTLVDGP TVKRQTANTL KCMQTLSRAQ SQISSRRSRL LEENRTLQRQ LMQKHAKELE
201: SLRRGEEWDD TLQSKEQIEA SLLGRYEAAM RRERALAYSY SHQQTWKKSS KATNLLFMDP TNPQWGWSWL ERWMGARSRE NQNMSEKELK GDQMSVRSAS
301: MSMSGGEITK AFARHQLNSE LPSSPLSQKP NRPSSRQSPT TPSKPSTARK PKPGSARVSA INQEDDTRSV FSVQSEMNRR HSIAGSSVRD DESLGSCSSV
401: PSYMASTQSA KARTTRLQSP LGVENGTPPA KGSAGSVKKR LSYSPSPAIT RRHSGPPKVE ITSTNTSNAE KYVNGVVN
001: MGKKAKWFSS VKKAFSPDSK KSKQKLAEGQ NGVISNPPVV DNVRQSSSSP PPALAPREVR VAEVIVERNR DLSPPSTADA VNVTATDVPV VPSSSAPGVV
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S
Arabidopsis Description
iqd2At5g03040/F15A17_70 [Source:UniProtKB/TrEMBL;Acc:Q93ZH7]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.