CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05647
EES09373
EES16732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03040.1	EES05647	AT3G27960.1	21798944
AT5G03040.1	EES09373	AT4G09570.1	19130088
AT5G03040.1	EES16732	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042973_P007	Maize	cytosol	92.77	91.12
Os01t0833800-01	Rice	plasma membrane	82.33	82.0
TraesCS3D01G346500.1	Wheat	cytosol	79.32	79.16
HORVU3Hr1G087500.2	Barley	cytosol	79.32	79.16
TraesCS3B01G385100.1	Wheat	cytosol	79.12	78.96
TraesCS3A01G352500.1	Wheat	cytosol	78.92	78.76
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	50.6	54.9
GSMUA_Achr7P22680_001	Banana	cytosol	49.0	52.47
PGSC0003DMT400004433	Potato	cytosol	48.8	50.62
Solyc10g084280.1.1	Tomato	nucleus	47.99	50.0
PGSC0003DMT400027139	Potato	cytosol	47.99	49.69
GSMUA_Achr10P...	Banana	cytosol	41.97	49.53
Solyc09g007410.2.1	Tomato	cytosol	47.99	49.48
VIT_08s0040g02360.t01	Wine grape	nucleus	47.59	49.48
KXG21175	Sorghum	cytosol	45.38	47.78
PGSC0003DMT400045333	Potato	cytosol	44.78	47.35
Solyc10g086060.1.1	Tomato	cytosol	44.38	46.92
CDY11238	Canola	cytosol, plastid	37.75	45.52
KRG95941	Soybean	nucleus	43.57	45.49
GSMUA_Achr11P...	Banana	mitochondrion	41.97	45.24
KRH67648	Soybean	nucleus	43.17	45.07
KRH32420	Soybean	cytosol	42.77	44.94
KRH19825	Soybean	cytosol	41.16	43.62
CDX80849	Canola	cytosol, plastid	37.15	43.43
CDY10410	Canola	cytosol, plastid	37.35	41.89
AT5G03040.1	Thale cress	cytosol, plastid	38.15	41.21
CDY04876	Canola	nucleus, plastid	36.75	41.12
CDY55696	Canola	nucleus, plastid	35.94	40.96
Bra028854.1-P	Field mustard	nucleus, plastid	36.35	40.67
CDX70333	Canola	cytosol	36.75	38.12
Bra009554.1-P	Field mustard	cytosol	35.74	37.79
AT3G09710.2	Thale cress	nucleus	33.53	35.68
OQU78148	Sorghum	cytosol	38.96	34.64
Bra034081.1-P	Field mustard	nucleus	29.92	33.56
EER87873	Sorghum	nucleus	20.08	30.03
Bra001299.1-P	Field mustard	nucleus	28.11	29.6
CDX73992	Canola	nucleus	27.71	28.93
CDY07937	Canola	nucleus	27.31	28.45
CDY22198	Canola	cytosol	31.73	28.26
OQU86150	Sorghum	cytosol	24.7	27.7
CDY41307	Canola	cytosol	30.32	27.61
EES03502	Sorghum	mitochondrion	23.09	26.32
EES14418	Sorghum	cytosol	29.72	25.78
EER90769	Sorghum	mitochondrion	22.69	25.68
KXG24027	Sorghum	cytosol	22.69	25.68
EER91163	Sorghum	cytosol	20.48	24.17
EES01898	Sorghum	cytosol	26.1	23.09
KXG22437	Sorghum	mitochondrion, plastid	22.49	20.51

Protein Annotations

EnsemblPlants:KXG33651	EnsemblPlantsGene:SORBI_3003G346000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048
InterPro:IQ_motif_EF-hand-BS	ncoils:Coil	PANTHER:PTHR32295	PANTHER:PTHR32295:SF28	PFAM:PF00612	PFscan:PS50096
ProteinID:KXG33650.1	ProteinID:KXG33651	ProteinID:KXG33651.1	ProteinID:KXG33652.1	ProteinID:KXG33653.1	SEG:seg
SMART:SM00015	UniParc:UPI0002207295	UniProt:A0A1B6Q6W8	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr3:-:66695225..66699159

Molecular Weight (calculated)

55240.8 Da

IEP (calculated)

11.039

GRAVY (calculated)

-0.795

Length

498 amino acids

Sequence
(BLAST)

001: MGKKGKWFSA VKKVFSSSGT DGKEAKAEKA DKSKSKRRWP FGKTKKHSEP SISTVAGTAP VAPLPSPPPT QPHSLEIKDV NPLETDSEQN KHAYSVALAS
101: AVAAEAAAVA AQAAAEVVRL TAVTTAAPKM PVSSMEELAA TKIQTAFRGY LARRALRALR GLVRLKSLVD GNAVKRQTAH TLQCTQTMTR VQTQIYSRRV
201: KLEEEKQALQ RQLQLKHQRE LEKMKIDEDW DHSHQSKEQI EANLMMKQEA AMRRERALAY AFSHQWRTSG RTITPTFTEP GNPNWGWSWM ERWMTARPWE
301: SRLVASDKDP KERALTKNPS TITVQAASVP RAISIQRPAT PNKSSRPPSR QSPSTPPSKA PSTSGKTRPA SPRGNWLYKE DDLRSITSIR SERPRRQSTG
401: GGGSVRDDAS LTSTPPLPSY MQSTESARAK SRYRSLLTEK LEVPERAPLV HSVVKKRLSF PVVDKPSVVP TDKPKERVRR HSDPPKVDPA TLKDVPAA

Best Arabidopsis Sequence Match ( AT3G52290.1 )
(BLAST)

001: MGKSWFSAVK KALSPEPKQK KEQKPHKSKK WFGKSKKLDV TNSGAAYSPR TVKDAKLKEI EEQQSRHAYS VAIATAAAAE AAVAAAQAAA EVVRLSALSR
101: FPGKSMEEIA AIKIQTAFRG YMARRALRAL RGLVRLKSLV QGKCVRRQAT STLQSMQTLA RVQYQIRERR LRLSEDKQAL TRQLQQKHNK DFDKTGENWN
201: DSTLSREKVE ANMLNKQVAT MRREKALAYA FSHQNTWKNS TKMGSQTFMD PNNPHWGWSW LERWMAARPN ENHSLTPDNA EKDSSARSVA SRAMSEMIPR
301: GKNLSPRGKT PNSRRGSSPR VRQVPSEDSN SIVSFQSEQP CNRRHSTCGS IPSTRDDESF TSSFSQSVPG YMAPTQAAKA RARFSNLSPL SSEKTAKKRL
401: SFSGSPKTVR RFSGPPKLES NVTKKDTNLA

Arabidopsis Description

IQD3IQD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.