Factsheet for GSMUA_Achr7P22680_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
extracellular 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr2P09630_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03040.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT5G03040.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944
AT5G03040.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT5G03040.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT5G03040.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT5G03040.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	65.16	71.8
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	57.85	58.61
GSMUA_Achr11P...	Banana	mitochondrion	55.7	56.06
GSMUA_Achr3P17820_001	Banana	cytosol	54.84	53.35
GSMUA_Achr10P...	Banana	nucleus	51.4	53.11
PGSC0003DMT400004433	Potato	cytosol	53.76	52.08
Solyc10g084280.1.1	Tomato	nucleus	53.33	51.88
PGSC0003DMT400027139	Potato	cytosol	53.12	51.35
Solyc09g007410.2.1	Tomato	cytosol	53.33	51.35
VIT_08s0040g02360.t01	Wine grape	nucleus	52.69	51.15
Os01t0833800-01	Rice	plasma membrane	54.19	50.4
HORVU3Hr1G087500.2	Barley	cytosol	53.76	50.1
TraesCS3D01G346500.1	Wheat	cytosol	53.55	49.9
TraesCS3A01G352500.1	Wheat	cytosol	53.55	49.9
TraesCS3B01G385100.1	Wheat	cytosol	53.55	49.9
PGSC0003DMT400045333	Potato	cytosol	49.68	49.04
KXG33651	Sorghum	cytosol	52.47	49.0
CDY11238	Canola	cytosol, plastid	43.01	48.43
Solyc10g086060.1.1	Tomato	cytosol	49.03	48.41
Zm00001d042973_P007	Maize	cytosol	52.69	48.32
KRH67648	Soybean	nucleus	49.46	48.22
KRG95941	Soybean	nucleus	49.25	48.01
KRH19825	Soybean	cytosol	48.17	47.66
KRH32420	Soybean	cytosol	47.96	47.05
CDX80849	Canola	cytosol, plastid	42.58	46.48
GSMUA_Achr7P18240_001	Banana	cytosol	46.45	45.76
CDY10410	Canola	cytosol, plastid	40.86	42.79
CDY55696	Canola	nucleus, plastid	40.22	42.79
AT5G03040.1	Thale cress	cytosol, plastid	42.37	42.73
Bra028854.1-P	Field mustard	nucleus, plastid	40.65	42.47
CDY04876	Canola	nucleus, plastid	40.65	42.47
Bra009554.1-P	Field mustard	cytosol	39.78	39.28
CDX70333	Canola	cytosol	40.22	38.96
AT3G09710.2	Thale cress	nucleus	36.13	35.9
Bra034081.1-P	Field mustard	nucleus	32.9	34.46
GSMUA_Achr6P02050_001	Banana	cytosol	10.75	32.26
HORVU1Hr1G071700.1	Barley	nucleus	34.62	31.32
CDX73992	Canola	nucleus	32.04	31.24
TraesCS1D01G287100.2	Wheat	cytosol	35.05	30.81
TraesCS1A01G288100.2	Wheat	nucleus	34.41	30.71
Os05t0463300-00	Rice	plasma membrane	33.12	30.68
GSMUA_Achr1P18950_001	Banana	nucleus	30.11	30.57
Bra001299.1-P	Field mustard	nucleus	30.75	30.23
OQU78148	Sorghum	cytosol	35.91	29.82
CDY07937	Canola	nucleus	30.11	29.29
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	29.03	29.28
GSMUA_Achr1P16160_001	Banana	nucleus	28.17	29.24
GSMUA_Achr6P14440_001	Banana	nucleus	10.75	29.24
TraesCS1B01G297500.1	Wheat	cytosol	32.9	28.98
GSMUA_Achr7P02870_001	Banana	mitochondrion	18.71	28.9
GSMUA_Achr2P20050_001	Banana	nucleus	18.28	28.72
GSMUA_Achr2P16650_001	Banana	nucleus	26.02	28.54
CDY41307	Canola	cytosol	33.33	28.34
CDY22198	Canola	cytosol	33.76	28.09
GSMUA_Achr6P35280_001	Banana	endoplasmic reticulum	18.49	28.01
GSMUA_Achr7P09640_001	Banana	endoplasmic reticulum	24.52	27.67
GSMUA_Achr10P...	Banana	cytosol	25.16	27.66
GSMUA_Achr8P32220_001	Banana	cytosol	25.59	27.23
GSMUA_Achr4P22800_001	Banana	cytosol	24.95	26.73
GSMUA_Achr6P04930_001	Banana	cytosol	23.23	26.6
GSMUA_Achr10P...	Banana	cytosol	25.59	26.33
GSMUA_Achr5P02600_001	Banana	cytosol	24.52	25.97
GSMUA_Achr4P31410_001	Banana	cytosol	24.3	25.68
Zm00001d038395_P005	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	34.62	24.77
GSMUA_Achr2P15730_001	Banana	cytosol	22.8	24.04

Protein Annotations

EnsemblPlants:GSMUA_Achr7P22680_001	EnsemblPlants:GSMUA_Achr7T22680_001	EnsemblPlantsGene:GSMUA_Achr7G22680_001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	ncoils:Coil	PANTHER:PTHR32295	PANTHER:PTHR32295:SF28
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	SEG:seg	SMART:SM00015	UniParc:UPI000294E4C6
UniProt:M0TJV4	MapMan:35.1	:	:	:	:

Description

Putative Protein IQ-DOMAIN 1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G22680_001]

Coordinates

chr7:+:25108570..25112362

Molecular Weight (calculated)

52566.2 Da

IEP (calculated)

10.683

GRAVY (calculated)

-0.814

Length

465 amino acids

Sequence
(BLAST)

001: MGRKGKWFSV VKSVLIPNCC QGDHGKSKHS DPLPTKEVET TAHDAAQPLP LAPIEGDKLT EKGDEQSKHA YSVVALASAV AAEAAAVAAQ AAAEVVCLTT
101: STTRLVGEPR EEVAAIKIQT AFRGYLARRE LRILRGLFRL KRLVDGNVVR SQTYNTLHCM QKMARVQTQI RARRIRMTEE NQALQRHLQR KYEKELEKAK
201: IEEEWDDSLR SKEKIEANLV NRQEAAVRRE RALAYAFSHQ WKSSSRSLTP TFTDPRNPQW GWSWLERWMA ARPWENHRIT ETNDHDSIRS ATFSLIGQTM
301: KRRDTSLERT PSAIRKSSRP PSRQSPMTPQ SKPRSRKISL SPRGGRRLVD EDARSMVSFQ SERPRRHSIA GSSARDDESL VSSQSIPSYM ASTESARARS
401: RFHSPQSDMA DTPGKRSICS VKKRLSFPMA DDNSISSPAA RIRRYSEPPK VDISPVNNEE QSVEN

Best Arabidopsis Sequence Match ( AT5G03040.2 )
(BLAST)

001: MGKKAKWFSS VKKAFSPDSK KSKQKLAEGQ NGVISNPPVV DNVRQSSSSP PPALAPREVR VAEVIVERNR DLSPPSTADA VNVTATDVPV VPSSSAPGVV
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S

Arabidopsis Description

iqd2At5g03040/F15A17_70 [Source:UniProtKB/TrEMBL;Acc:Q93ZH7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.