Factsheet for GSMUA_Achr10P29440_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr2P09630_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03040.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT5G03040.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944
AT5G03040.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT5G03040.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT5G03040.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT5G03040.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P22680_001	Banana	cytosol	71.8	65.16
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	55.45	50.98
GSMUA_Achr11P...	Banana	mitochondrion	52.37	47.84
GSMUA_Achr10P...	Banana	nucleus	50.24	47.11
GSMUA_Achr3P17820_001	Banana	cytosol	52.37	46.23
VIT_08s0040g02360.t01	Wine grape	nucleus	49.76	43.84
PGSC0003DMT400004433	Potato	cytosol	49.76	43.75
Solyc09g007410.2.1	Tomato	cytosol	49.29	43.06
Solyc10g084280.1.1	Tomato	nucleus	48.1	42.47
PGSC0003DMT400027139	Potato	cytosol	48.1	42.2
Os01t0833800-01	Rice	plasma membrane	50.0	42.2
TraesCS3A01G352500.1	Wheat	cytosol	49.76	42.08
TraesCS3D01G346500.1	Wheat	cytosol	49.76	42.08
HORVU3Hr1G087500.2	Barley	cytosol	49.76	42.08
KXG33651	Sorghum	cytosol	49.53	41.97
CDY11238	Canola	cytosol, plastid	41.0	41.89
TraesCS3B01G385100.1	Wheat	cytosol	49.53	41.88
Solyc10g086060.1.1	Tomato	cytosol	46.68	41.83
KRG95941	Soybean	nucleus	46.92	41.51
KRH67648	Soybean	nucleus	46.68	41.3
Zm00001d042973_P007	Maize	cytosol	49.53	41.22
PGSC0003DMT400045333	Potato	cytosol	45.97	41.19
GSMUA_Achr7P18240_001	Banana	cytosol	45.02	40.25
KRH19825	Soybean	cytosol	44.31	39.79
CDX80849	Canola	cytosol, plastid	39.81	39.44
KRH32420	Soybean	cytosol	43.84	39.03
AT5G03040.1	Thale cress	cytosol, plastid	42.18	38.61
CDY10410	Canola	cytosol, plastid	39.57	37.61
CDY55696	Canola	nucleus, plastid	38.86	37.53
CDY04876	Canola	nucleus, plastid	39.57	37.53
Bra028854.1-P	Field mustard	nucleus, plastid	39.34	37.3
Bra009554.1-P	Field mustard	cytosol	38.63	34.61
CDX70333	Canola	cytosol	39.1	34.38
AT3G09710.2	Thale cress	nucleus	35.31	31.84
Bra034081.1-P	Field mustard	nucleus	31.99	30.41
GSMUA_Achr2P20050_001	Banana	nucleus	20.62	29.39
Os05t0463300-00	Rice	plasma membrane	33.18	27.89
CDX73992	Canola	nucleus	31.52	27.88
HORVU1Hr1G071700.1	Barley	nucleus	33.41	27.43
Bra001299.1-P	Field mustard	nucleus	30.57	27.27
TraesCS1D01G287100.2	Wheat	cytosol	33.89	27.03
TraesCS1A01G288100.2	Wheat	nucleus	33.18	26.87
CDY07937	Canola	nucleus	30.09	26.57
OQU78148	Sorghum	cytosol	35.07	26.43
TraesCS1B01G297500.1	Wheat	cytosol	32.46	25.95
GSMUA_Achr7P02870_001	Banana	mitochondrion	18.48	25.91
GSMUA_Achr1P18950_001	Banana	nucleus	27.96	25.76
GSMUA_Achr6P14440_001	Banana	nucleus	10.43	25.73
CDY22198	Canola	cytosol	33.89	25.58
CDY41307	Canola	cytosol	32.7	25.23
GSMUA_Achr2P16650_001	Banana	nucleus	25.12	25.0
GSMUA_Achr10P...	Banana	cytosol	24.88	24.82
GSMUA_Achr7P09640_001	Banana	endoplasmic reticulum	24.17	24.76
GSMUA_Achr1P16160_001	Banana	nucleus	26.07	24.55
GSMUA_Achr6P02050_001	Banana	cytosol	9.0	24.52
GSMUA_Achr8P32220_001	Banana	cytosol	25.36	24.49
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	26.54	24.3
GSMUA_Achr6P04930_001	Banana	cytosol	22.75	23.65
GSMUA_Achr4P31410_001	Banana	cytosol	24.64	23.64
GSMUA_Achr4P22800_001	Banana	cytosol	23.7	23.04
GSMUA_Achr5P02600_001	Banana	cytosol	23.93	23.01
GSMUA_Achr10P...	Banana	cytosol	24.17	22.57
GSMUA_Achr6P35280_001	Banana	endoplasmic reticulum	16.35	22.48
Zm00001d038395_P005	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	33.89	22.0
GSMUA_Achr2P15730_001	Banana	cytosol	22.27	21.32

Protein Annotations

EnsemblPlants:GSMUA_Achr10P29440_001	EnsemblPlants:GSMUA_Achr10T29440_001	EnsemblPlantsGene:GSMUA_Achr10G29440_001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF28	PFAM:PF00612
PFAM:PF13178	PFscan:PS50096	SEG:seg	SMART:SM00015	UniParc:UPI0002960E8D	UniProt:M0RMG8
MapMan:35.1	:	:	:	:	:

Description

Putative IQ calmodulin-binding motif domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G29440_001]

Coordinates

chr10:-:31975662..31979841

Molecular Weight (calculated)

47632.5 Da

IEP (calculated)

10.413

GRAVY (calculated)

-0.766

Length

422 amino acids

Sequence
(BLAST)

001: MGKKGKWFTA VKRTLICNCC QGEQRENLGK SKHSDPLPTK EVETAAHDDA QLLPLAPIEG VKLTETGDEE SKHANSGALA SAVIHLTTSM TGLLGESKEE
101: IAAIKIQAAF RGCLARRTLR DLRGFVRLKR WVDGNSVKSQ TTNTLHSMET MARVQTQIRS RRIRMTEENQ ALQRHLQRKH DIQLAKIKIN EEWDDSLRSK
201: EQIEANILNK QEAAIRRERA LAYAFSHQVW KSSSRSSTMV PTDPSNPQWG WNWLQRWMAA RPWENHRTTE TKDDATIKIA NCSTSPATPQ SKPSSVMNRK
301: KSVSPPRLSR CSADDDSRSM LSLQSEQPRR RSSSARDNES LVSSVSLPSY MASTESVRAR SRFLSPQSER HETLKERLIC SVKRLSFPMT DVNSISPPAR
401: IPKVEISPLK DVAIEKEQEA NN

Best Arabidopsis Sequence Match ( AT3G09710.1 )
(BLAST)

001: MVKKAKWLKN VKKAFSPDSK KLKHESVECQ DSVISYPVLI ATSRSSSPQF EVRVDEVNYE QKKNLYPPSS DSVTATVAHV LVDSPPSSPE SVHQAIVVNR
101: FAGKSKEEAA AILIQSTFRG HLARRESQVM RGQERLKLLM EGSVVQRQAA ITLKCMQTLS RVQSQIRSRR IRMSEENQAR HKQLLQKHAK ELGGLKNGGN
201: WNYSNQSKEQ VEAGMLHKYE ATMRRERALA YAFTHQQNLK SFSKTANPMF MDPSNPTWGW SWLERWMAGR PWESSEKEQN TTNNDNSSVK NSTNRNSQGG
301: ETAKSSNRNK LNSSTKPNTP SASSTATRNP RKKRPIPSSI KSKSSDDEAK SSERNRRPSI ARPSVSDDET LSSSTARRSS NLIPTTKSAR GKPKSQTSSR
401: VAVTTSTTEE SSILPEKAPA KKRLSTSASP APKPRRSSAP PKVEKGVLKA ERTP

Arabidopsis Description

IQD1IQ-domain 1 [Source:UniProtKB/TrEMBL;Acc:F4J1A4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.