Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P14440_001 | Banana | nucleus | 38.51 | 66.67 |
| CDY32322 | Canola | cytosol, plastid | 39.86 | 45.56 |
| VIT_19s0014g01690.t01 | Wine grape | cytosol | 46.96 | 44.98 |
| HORVU7Hr1G024060.1 | Barley | plastid | 26.35 | 44.32 |
| Bra021588.1-P | Field mustard | cytosol, plastid | 39.19 | 43.94 |
| CDY20099 | Canola | cytosol | 39.19 | 43.94 |
| AT3G15050.1 | Thale cress | plastid | 36.82 | 42.08 |
| Solyc12g014130.1.1 | Tomato | nucleus | 36.82 | 41.76 |
| PGSC0003DMT400039646 | Potato | mitochondrion | 39.53 | 39.53 |
| TraesCS7D01G107600.2 | Wheat | nucleus | 42.23 | 38.23 |
| TraesCS7A01G112000.1 | Wheat | nucleus | 42.23 | 38.23 |
| HORVU7Hr1G023980.1 | Barley | nucleus | 42.23 | 38.23 |
| EER87873 | Sorghum | nucleus | 42.91 | 38.14 |
| TraesCS7B01G010100.1 | Wheat | nucleus | 41.55 | 37.61 |
| Zm00001d045305_P001 | Maize | nucleus | 41.89 | 37.01 |
| KRH27315 | Soybean | cytosol | 36.49 | 36.73 |
| Os06t0155300-01 | Rice | plasma membrane | 43.24 | 36.26 |
| KRH55128 | Soybean | mitochondrion, nucleus | 35.47 | 35.47 |
| KRH22000 | Soybean | plastid | 36.82 | 31.78 |
| Zm00001d009320_P001 | Maize | nucleus | 21.28 | 27.27 |
| GSMUA_Achr10P... | Banana | cytosol | 29.39 | 20.62 |
| GSMUA_Achr6P35280_001 | Banana | endoplasmic reticulum | 20.61 | 19.87 |
| GSMUA_Achr2P16650_001 | Banana | nucleus | 28.38 | 19.81 |
| GSMUA_Achr4P22800_001 | Banana | cytosol | 28.72 | 19.59 |
| GSMUA_Achr7P09640_001 | Banana | endoplasmic reticulum | 27.03 | 19.42 |
| GSMUA_Achr6P04930_001 | Banana | cytosol | 26.35 | 19.21 |
| GSMUA_Achr5P02600_001 | Banana | cytosol | 28.04 | 18.91 |
| GSMUA_Achr4P31410_001 | Banana | cytosol | 28.04 | 18.86 |
| GSMUA_Achr6P02050_001 | Banana | cytosol | 9.8 | 18.71 |
| GSMUA_Achr10P... | Banana | nucleus | 28.04 | 18.44 |
| GSMUA_Achr3P17820_001 | Banana | cytosol | 29.73 | 18.41 |
| GSMUA_Achr7P22680_001 | Banana | cytosol | 28.72 | 18.28 |
| GSMUA_Achr10P... | Banana | cytosol | 26.01 | 18.2 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 27.36 | 17.65 |
| GSMUA_Achr1P18950_001 | Banana | nucleus | 26.35 | 17.03 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 26.35 | 16.92 |
| GSMUA_Achr7P18240_001 | Banana | cytosol | 26.35 | 16.53 |
| GSMUA_Achr1P16160_001 | Banana | nucleus | 24.32 | 16.07 |
| GSMUA_Achr2P15730_001 | Banana | cytosol | 23.31 | 15.65 |
| GSMUA_Achr7P02870_001 | Banana | mitochondrion | 15.54 | 15.28 |
| GSMUA_Achr10P... | Banana | cytosol | 22.64 | 14.82 |
| GSMUA_Achr11P... | Banana | mitochondrion | 22.97 | 14.72 |
| GSMUA_Achr8P32220_001 | Banana | cytosol | 20.95 | 14.19 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P20050_001 | EnsemblPlants:GSMUA_Achr2T20050_001 | EnsemblPlantsGene:GSMUA_Achr2G20050_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF9 | PFAM:PF00612 | PFscan:PS50096 |
| SEG:seg | UniParc:UPI000294AB2C | UniProt:M0S9J6 | MapMan:35.1 | : | : |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr2G20050_001]
Coordinates
chr2:-:19977293..19981072
Molecular Weight (calculated)
33652.1 Da
IEP (calculated)
10.938
GRAVY (calculated)
-0.816
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTGDWLRTL ISRKKKNKER PKQVIGYLLF YSCSISLLKS RSHNDPNKLL NGALNGNSQD CGMTIEIIAA IRIQTAFRGF KARKTLGSLR RTQKLQAFTY
101: HNSVKKQTTN TLIHVHAWSK IQAEIRARRA NMVAEGRIRQ KKHDNQLKLE AKLHDLEVDW NGGSETKEEI IARIQQREEA AVKRERAMAY AFSHQWRANS
201: GMNQGPFVFE LAKGNWEWSW VDKWIAAQPW ETRPSTLTKV VNRVGKGAKL PSSVKHASID GKEFAKKPSK QSDEETTNQE SNTKAANSGH SRTKTT
101: HNSVKKQTTN TLIHVHAWSK IQAEIRARRA NMVAEGRIRQ KKHDNQLKLE AKLHDLEVDW NGGSETKEEI IARIQQREEA AVKRERAMAY AFSHQWRANS
201: GMNQGPFVFE LAKGNWEWSW VDKWIAAQPW ETRPSTLTKV VNRVGKGAKL PSSVKHASID GKEFAKKPSK QSDEETTNQE SNTKAANSGH SRTKTT
001: MGSGWLLRSI ICLNGTKKNK SNRGNVHSET SNRVKPVESS SAASTKLTVE VAVIRIQKAF RAFKARKRLC SLKSARRFNS LIQGHTVMNQ TSTALNVIHS
101: WYDIQNQIRA RRLYMVTQGR LQHKRLENRL KLEIKLHELE VEWCGGSETM EEILAKIQQK EEATVKRERA MAYAFSHQWR ANATQYLGQA SFNLGKESWG
201: WSWKERWIAA RPWEIRAQCY VVKPIKPSKK PEKSSPNNVI TKTSAKPDEV GNSKKPGSG
101: WYDIQNQIRA RRLYMVTQGR LQHKRLENRL KLEIKLHELE VEWCGGSETM EEILAKIQQK EEATVKRERA MAYAFSHQWR ANATQYLGQA SFNLGKESWG
201: WSWKERWIAA RPWEIRAQCY VVKPIKPSKK PEKSSPNNVI TKTSAKPDEV GNSKKPGSG
Arabidopsis Description
IQD10IQ-domain 10 [Source:UniProtKB/TrEMBL;Acc:Q9LKA0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.