Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 1
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039646 | Potato | mitochondrion | 94.64 | 83.45 |
| AT3G15050.1 | Thale cress | plastid | 44.44 | 44.79 |
| VIT_19s0014g01690.t01 | Wine grape | cytosol | 51.72 | 43.69 |
| Bra021588.1-P | Field mustard | cytosol, plastid | 44.06 | 43.56 |
| CDY20099 | Canola | cytosol | 44.06 | 43.56 |
| CDY32322 | Canola | cytosol, plastid | 42.91 | 43.24 |
| Solyc10g008790.2.1 | Tomato | cytosol | 48.28 | 41.45 |
| KRH55128 | Soybean | mitochondrion, nucleus | 45.98 | 40.54 |
| Solyc02g077260.2.1 | Tomato | nucleus | 46.36 | 40.07 |
| GSMUA_Achr6P14440_001 | Banana | nucleus | 25.67 | 39.18 |
| KRH27315 | Soybean | cytosol | 43.68 | 38.78 |
| GSMUA_Achr2P20050_001 | Banana | nucleus | 41.76 | 36.82 |
| HORVU7Hr1G024060.1 | Barley | plastid | 24.14 | 35.8 |
| EER87873 | Sorghum | nucleus | 43.68 | 34.23 |
| KRH22000 | Soybean | plastid | 44.83 | 34.11 |
| Zm00001d045305_P001 | Maize | nucleus | 42.53 | 33.13 |
| HORVU7Hr1G023980.1 | Barley | nucleus | 41.38 | 33.03 |
| TraesCS7D01G107600.2 | Wheat | nucleus | 41.38 | 33.03 |
| TraesCS7A01G112000.1 | Wheat | nucleus | 41.38 | 33.03 |
| TraesCS7B01G010100.1 | Wheat | nucleus | 40.23 | 32.11 |
| Os06t0155300-01 | Rice | plasma membrane | 41.76 | 30.88 |
| Zm00001d009320_P001 | Maize | nucleus | 21.46 | 24.24 |
| Solyc08g062940.2.1 | Tomato | cytosol | 27.59 | 23.3 |
| Solyc04g050050.2.1 | Tomato | cytosol | 27.59 | 18.27 |
| Solyc11g071840.1.1 | Tomato | cytosol | 30.65 | 17.86 |
| Solyc09g007410.2.1 | Tomato | cytosol | 29.89 | 16.15 |
| Solyc03g121760.2.1 | Tomato | cytosol | 26.44 | 16.08 |
| Solyc10g084280.1.1 | Tomato | nucleus | 29.12 | 15.9 |
| Solyc10g086060.1.1 | Tomato | cytosol | 28.35 | 15.71 |
| Solyc10g005000.2.1 | Tomato | nucleus | 20.31 | 13.45 |
| Solyc03g083100.2.1 | Tomato | nucleus | 24.14 | 13.43 |
| Solyc08g014280.2.1 | Tomato | cytosol | 27.59 | 13.36 |
| Solyc06g052010.1.1 | Tomato | cytosol | 17.24 | 11.34 |
| Solyc06g053450.2.1 | Tomato | nucleus | 25.67 | 11.32 |
| Solyc08g083240.2.1 | Tomato | nucleus | 19.54 | 10.43 |
| Solyc01g009340.2.1 | Tomato | nucleus | 15.33 | 9.93 |
Protein Annotations
| EnsemblPlants:Solyc12g014130.1.1 | EnsemblPlantsGene:Solyc12g014130.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000048 |
| InterPro:IQ_motif_EF-hand-BS | ncoils:Coil | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF93 | PFAM:PF00612 | PFscan:PS50096 |
| SEG:seg | UniParc:UPI000276A64F | UniProt:K4DCU8 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr12:+:4940650..4946027
Molecular Weight (calculated)
30015.0 Da
IEP (calculated)
11.110
GRAVY (calculated)
-0.817
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGLKRNKRR KSKQLKITST STAFDEPKGD VQVPSAHYSN GTSSSKKITC KTKFTHNTAA TKIQTAYRAH LARKTLRRVR GAVRFQGVIE GLSVNNQISG
101: TLKQIHCWSK IQSEIRARRL NMVTQGHNKQ KKIQNQQKLE AKLHELEVEW SSSAETIEEI LQKLQQREEA ATKRERAMAY AFSHQWRANS NKYFGQAYYD
201: LGKESWGWSW MERWIAVRPW ETRVQTNPIV PKTSHSQQVA KITSKATNLG PMKLVVSIKN H
101: TLKQIHCWSK IQSEIRARRL NMVTQGHNKQ KKIQNQQKLE AKLHELEVEW SSSAETIEEI LQKLQQREEA ATKRERAMAY AFSHQWRANS NKYFGQAYYD
201: LGKESWGWSW MERWIAVRPW ETRVQTNPIV PKTSHSQQVA KITSKATNLG PMKLVVSIKN H
001: MGSGWLLRSI ICLNGTKKNK SNRGNVHSET SNRVKPVESS SAASTKLTVE VAVIRIQKAF RAFKARKRLC SLKSARRFNS LIQGHTVMNQ TSTALNVIHS
101: WYDIQNQIRA RRLYMVTQGR LQHKRLENRL KLEIKLHELE VEWCGGSETM EEILAKIQQK EEATVKRERA MAYAFSHQWR ANATQYLGQA SFNLGKESWG
201: WSWKERWIAA RPWEIRAQCY VVKPIKPSKK PEKSSPNNVI TKTSAKPDEV GNSKKPGSG
101: WYDIQNQIRA RRLYMVTQGR LQHKRLENRL KLEIKLHELE VEWCGGSETM EEILAKIQQK EEATVKRERA MAYAFSHQWR ANATQYLGQA SFNLGKESWG
201: WSWKERWIAA RPWEIRAQCY VVKPIKPSKK PEKSSPNNVI TKTSAKPDEV GNSKKPGSG
Arabidopsis Description
IQD10IQ-domain 10 [Source:UniProtKB/TrEMBL;Acc:Q9LKA0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.