Factsheet for Solyc08g014280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041427	Potato	cytosol	96.47	97.2
KRH71267	Soybean	cytosol	58.63	59.07
KRH50198	Soybean	cytosol	58.26	58.91
Solyc06g053450.2.1	Tomato	nucleus	61.04	55.57
Bra007471.1-P	Field mustard	nucleus	50.83	55.24
CDX71881	Canola	nucleus	50.46	55.06
CDY05984	Canola	nucleus	50.46	54.95
VIT_05s0094g00530.t01	Wine grape	cytosol	59.74	53.85
AT3G59690.2	Thale cress	nucleus	50.28	52.42
CDY30433	Canola	cytosol	43.23	51.78
CDY23391	Canola	cytosol	43.23	50.54
GSMUA_Achr7P02870_001	Banana	mitochondrion	25.23	45.18
Bra037689.1-P	Field mustard	cytosol	44.16	45.16
GSMUA_Achr8P32220_001	Banana	cytosol	36.18	44.62
CDX83468	Canola	plasma membrane	44.16	43.19
CDY44247	Canola	nucleus	44.16	42.81
CDX79809	Canola	nucleus	47.12	42.47
Bra000318.1-P	Field mustard	nucleus	46.75	42.35
CDY66694	Canola	nucleus	46.75	42.07
Bra004776.1-P	Field mustard	nucleus	47.12	40.64
AT2G43680.1	Thale cress	nucleus	49.72	40.06
Os01t0896200-01	Rice	mitochondrion	22.45	35.91
EES01898	Sorghum	cytosol	35.62	34.1
Solyc09g007410.2.1	Tomato	cytosol	30.43	33.95
Solyc10g084280.1.1	Tomato	nucleus	28.94	32.64
Zm00001d012167_P001	Maize	cytosol	34.69	32.35
Solyc10g086060.1.1	Tomato	cytosol	27.09	31.0
Solyc04g050050.2.1	Tomato	cytosol	22.26	30.46
TraesCS3A01G398900.1	Wheat	cytosol	33.77	29.21
TraesCS3B01G431200.1	Wheat	cytosol	33.77	29.07
TraesCS3D01G392900.1	Wheat	cytosol	33.4	28.94
HORVU3Hr1G089690.1	Barley	cytosol	33.4	28.66
Solyc12g014130.1.1	Tomato	nucleus	13.36	27.59
Solyc08g062940.2.1	Tomato	cytosol	14.66	25.57
Solyc10g005000.2.1	Tomato	nucleus	18.55	25.38
Solyc03g083100.2.1	Tomato	nucleus	20.59	23.67
Solyc10g008790.2.1	Tomato	cytosol	12.99	23.03
Solyc11g071840.1.1	Tomato	cytosol	18.74	22.54
Solyc06g052010.1.1	Tomato	cytosol	16.51	22.42
Solyc02g077260.2.1	Tomato	nucleus	12.24	21.85
Solyc08g083240.2.1	Tomato	nucleus	18.92	20.86
Solyc03g121760.2.1	Tomato	cytosol	15.77	19.81
Solyc01g009340.2.1	Tomato	nucleus	14.29	19.11

Protein Annotations

EnsemblPlants:Solyc08g014280.2.1	EnsemblPlantsGene:Solyc08g014280.2	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF18	PFAM:PF00612
PFAM:PF13178	PFscan:PS50096	SEG:seg	SMART:SM00015	UniParc:UPI000276B28F	UniProt:K4CJ61
MapMan:20.6.2	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:4066231..4070217

Molecular Weight (calculated)

60761.5 Da

IEP (calculated)

11.141

GRAVY (calculated)

-0.872

Length

539 amino acids

Sequence
(BLAST)

001: MGKKGSWFSA IKRVFTPSSK EKLPNESEKK GAKEKKNRGK LKHGETKSFI PLFREPSSIE KILGEVDEEM LLSPRFTLPA GAVSPRISSY RFATPTATSP
101: RVASPKASSR RVTSPKAPSQ RVTSPRAISP KAHPPRVPSP NVSRNRKEIS YAYRPEPTLR ALNLSATKIQ AAYRGYMARR SFRALRGLVR LQGVVRSSNV
201: KKQTANAMKQ MQLLVRVQTQ IQSRRIQMLE NQALQHQAYK NDKDVESTIS KWTQLCEAGN NDNWDDSLLT KEEVEGRLRK KVEAVIKRER AMAYAYSHRL
301: WKNDPKSGLD MGANGFPWWW NWLERQLPSR NANKTPSAMK DIKLTPPRAI SEHKPSPTPL NNVTFRRILS DYDNNESSVT PMSTKSAIPM RGKQMHTPIR
401: TPPMNNSSLK KYSRGRASAS NYPFDLPLKD DDSLTSCPPF SVPHYMSQTA SATAKAKARA NSNPKERNPE KQSNDTKKRF SFPLTPNIWS SKWSKGSGKD
501: SASRKEVDKH ESMADHISVD STVSMPAVVG GRRPFNRFV

Best Arabidopsis Sequence Match ( AT3G59690.1 )
(BLAST)

001: MGKKGSWFSA IKRVFTPHSK EKQLSNNNQE PEIKSENKEK KKKGFGKKLR NGETNSFLPI FRQPSSIEKI LSEAEREHNL VFRPPTPTDR ANSSSTSVAS
101: PLVRPASPKV PSQRYVSSPK PISPRVAYPQ VHYPKPPSPK PPSPRAVSPR IVQRREFVHR PEPSLLVKNA YAIKIQAAFR GYMARRSFRA LKGLVRLQGV
201: VRGHSVKRQT MNAMKYMQLL VRVQTQVQSR RIQMLENRAR NDKDDTKLVS SRMSDDWDDS VLTKEEKDVR LHRKIDAMIK RERSMAYAYS HQLWKNSPKS
301: AQDIRTSGFP LWWNWVDRQK NQNQPFRLTP TRPSLSPQPQ SSNQNHFRLN NSFDTSTPNS SKSTFVTPSR PIHTPQPYSS SVSRYSRGGG RATQDSPFKD
401: DDSLTSCPPF SAPSYMAPTV SAKAKLRANS NPKERMDRTP VSTNEKRRSS FPLGSFKWNK GSLFMSNNSN NKGPGSSSSG AVVLEKHKTL KSVGNLSIDS
501: TVSMPATIGR RAFNRFA

Arabidopsis Description

IQD13IQ-domain 13 [Source:UniProtKB/TrEMBL;Acc:Q9M199]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.