Factsheet for PGSC0003DMT400041427

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g014280.2.1	Tomato	cytosol	97.2	96.47
KRH71267	Soybean	cytosol	58.5	58.5
KRH50198	Soybean	cytosol	58.13	58.35
Bra007471.1-P	Field mustard	nucleus	50.47	54.44
CDY05984	Canola	nucleus	50.28	54.34
CDX71881	Canola	nucleus	50.09	54.25
VIT_05s0094g00530.t01	Wine grape	cytosol	59.44	53.18
PGSC0003DMT400042121	Potato	cytosol, mitochondrion	61.31	53.16
AT3G59690.2	Thale cress	nucleus	49.91	51.64
CDY30433	Canola	cytosol	42.62	50.67
CDY23391	Canola	cytosol	42.8	49.67
GSMUA_Achr7P02870_001	Banana	mitochondrion	25.05	44.52
Bra037689.1-P	Field mustard	cytosol	43.36	44.02
GSMUA_Achr8P32220_001	Banana	cytosol	35.51	43.48
CDX83468	Canola	plasma membrane	43.55	42.29
CDX79809	Canola	nucleus	46.92	41.97
CDY44247	Canola	nucleus	43.55	41.91
Bra000318.1-P	Field mustard	nucleus	46.17	41.51
CDY66694	Canola	nucleus	46.36	41.4
Bra004776.1-P	Field mustard	nucleus	46.73	40.0
AT2G43680.1	Thale cress	nucleus	49.16	39.31
Os01t0896200-01	Rice	mitochondrion	22.06	35.01
PGSC0003DMT400004433	Potato	cytosol	30.65	34.17
EES01898	Sorghum	cytosol	35.33	33.57
Zm00001d012167_P001	Maize	cytosol	34.39	31.83
PGSC0003DMT400027139	Potato	cytosol	28.6	31.81
PGSC0003DMT400045333	Potato	cytosol	26.54	30.15
PGSC0003DMT400010610	Potato	nucleus	25.42	29.57
TraesCS3A01G398900.1	Wheat	cytosol	32.9	28.25
TraesCS3B01G431200.1	Wheat	cytosol	32.9	28.11
TraesCS3D01G392900.1	Wheat	cytosol	32.52	27.97
HORVU3Hr1G089690.1	Barley	cytosol	32.52	27.71
PGSC0003DMT400039646	Potato	mitochondrion	15.33	27.7
PGSC0003DMT400023467	Potato	nucleus	20.56	23.45
PGSC0003DMT400050471	Potato	cytosol	17.57	23.1
PGSC0003DMT400068456	Potato	cytosol	13.08	23.03
PGSC0003DMT400021183	Potato	cytosol	18.32	22.58
PGSC0003DMT400059119	Potato	cytosol	12.34	21.43
PGSC0003DMT400031576	Potato	nucleus	19.63	21.17
PGSC0003DMT400006376	Potato	cytosol	15.51	19.44
PGSC0003DMT400029325	Potato	mitochondrion	11.78	18.98
PGSC0003DMT400038175	Potato	cytosol	16.64	17.21

Protein Annotations

EnsemblPlants:PGSC0003DMT400041427	EnsemblPlantsGene:PGSC0003DMG400016053	EntrezGene:102592325	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF18
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PGSC:PGSC0003DMG400016053	RefSeq:XP_006366143.1	SEG:seg
SMART:SM00015	UniParc:UPI000296E23E	UniProt:M1BBD2	MapMan:20.6.2	:	:

Description

IQ-domain 13 [Source:PGSC_GENE;Acc:PGSC0003DMG400016053]

Coordinates

chr8:+:7262943..7268234

Molecular Weight (calculated)

60500.1 Da

IEP (calculated)

11.182

GRAVY (calculated)

-0.884

Length

535 amino acids

Sequence
(BLAST)

001: MGKKGSWFSA IKRVFTPSSK EKLPNESEKK GAKEKKSRGK LKHGETKSFI PLFREPSSIE KILGEVDEQM LLSPRFTLPA EVVSPRISSY RFATPSATSP
101: RVASPKASSR RITSPKAPSQ RVTSPRAISP KAHPPRVPSP NVSRNRKEIS YAYRPEPTLR TLNLSATKIQ AAYRGYMARR SFRALRGLVR LQGVVRSSNV
201: KKQTANAMKQ MQLLVRVQTQ IQSRRIQMLE NQALQHQAYR NDKEVESTIS KWTQLCEAGN NDNWDDSLLT KEEVEGRLRK KVEAVIKRER AMAYAYSHRL
301: WKNDPKSGLD MGANGFPWWW NWLERQLPSR NANKTPSAVK DIKLTPPRAI SEHKPSPTPL NNVTFRRILS DYDNNESSVT PMSTKSAIPT RGKQMHTPIR
401: TPPMNNSSLK KHSRARASAS NYPFDLPLKD DDSLTSCPPF SVPHYMSQTA SAKARANSNP KERNPEKQSN DTKKRFSFPL TPNIWSSKWS KGSGKDPTSR
501: KEVDKHESMA DHISVDSTVS MPAVVGGRRP FNRFV

Best Arabidopsis Sequence Match ( AT3G59690.1 )
(BLAST)

001: MGKKGSWFSA IKRVFTPHSK EKQLSNNNQE PEIKSENKEK KKKGFGKKLR NGETNSFLPI FRQPSSIEKI LSEAEREHNL VFRPPTPTDR ANSSSTSVAS
101: PLVRPASPKV PSQRYVSSPK PISPRVAYPQ VHYPKPPSPK PPSPRAVSPR IVQRREFVHR PEPSLLVKNA YAIKIQAAFR GYMARRSFRA LKGLVRLQGV
201: VRGHSVKRQT MNAMKYMQLL VRVQTQVQSR RIQMLENRAR NDKDDTKLVS SRMSDDWDDS VLTKEEKDVR LHRKIDAMIK RERSMAYAYS HQLWKNSPKS
301: AQDIRTSGFP LWWNWVDRQK NQNQPFRLTP TRPSLSPQPQ SSNQNHFRLN NSFDTSTPNS SKSTFVTPSR PIHTPQPYSS SVSRYSRGGG RATQDSPFKD
401: DDSLTSCPPF SAPSYMAPTV SAKAKLRANS NPKERMDRTP VSTNEKRRSS FPLGSFKWNK GSLFMSNNSN NKGPGSSSSG AVVLEKHKTL KSVGNLSIDS
501: TVSMPATIGR RAFNRFA

Arabidopsis Description

IQD13IQ-domain 13 [Source:UniProtKB/TrEMBL;Acc:Q9M199]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.