Factsheet for PGSC0003DMT400010610

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g050050.2.1	Tomato	cytosol	83.7	97.72
VIT_13s0019g03890.t01	Wine grape	cytosol	71.96	68.67
PGSC0003DMT400027139	Potato	cytosol	60.22	57.59
PGSC0003DMT400004433	Potato	cytosol	58.7	56.25
PGSC0003DMT400045333	Potato	cytosol	54.13	52.87
CDY38525	Canola	cytosol	35.0	38.98
CDX83237	Canola	cytosol	37.17	33.73
AT2G26410.2	Thale cress	cytosol	38.04	33.21
PGSC0003DMT400021183	Potato	cytosol	29.35	31.11
PGSC0003DMT400068456	Potato	cytosol	19.78	29.93
PGSC0003DMT400023467	Potato	nucleus	30.43	29.85
PGSC0003DMT400039646	Potato	mitochondrion	18.7	29.05
PGSC0003DMT400050471	Potato	cytosol	24.57	27.76
PGSC0003DMT400059119	Potato	cytosol	18.04	26.95
PGSC0003DMT400031576	Potato	nucleus	28.7	26.61
PGSC0003DMT400006376	Potato	cytosol	24.35	26.23
PGSC0003DMT400041427	Potato	cytosol	29.57	25.42
PGSC0003DMT400029325	Potato	mitochondrion	17.61	24.4
PGSC0003DMT400038175	Potato	cytosol	25.65	22.82
PGSC0003DMT400042121	Potato	cytosol, mitochondrion	28.7	21.39

Protein Annotations

EnsemblPlants:PGSC0003DMT400010610	EnsemblPlantsGene:PGSC0003DMG400004143	EntrezGene:102603111	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	ncoils:Coil	PANTHER:PTHR32295	PANTHER:PTHR32295:SF28
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PGSC:PGSC0003DMG400004143	RefSeq:XP_015159067.1	SEG:seg
SMART:SM00015	UniParc:UPI00029491F6	UniProt:M0ZYB8	MapMan:35.1	:	:

Description

SF16 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004143]

Coordinates

chr4:+:47970865..47973885

Molecular Weight (calculated)

50841.6 Da

IEP (calculated)

10.864

GRAVY (calculated)

-0.947

Length

460 amino acids

Sequence
(BLAST)

001: MGKKGNWFSS VKKALGSGNK KKDKKKQKSE KWSEKQQSDE MDSSNAETAL VSPAAPTPRP VEQMKLMEAE NEQNKHAYSV AIATAVAAEA AVAAAQAAAE
101: VVRLTAAACS SGKSKEEIAA IRIQTAFRGY LARRALKALR GLVRLKTMIQ GQSVKRQATS TLRCMQTLAR VQSQVRARRI RMSEENQTLQ RQLQQKHEKE
201: QEKLKASSQS GDDWNDSTRS KEQVDANLQM KQEAATRRER ALAYAYTHQS TRRNPSKSTN QTFMDPNNPH WGWSWLERWM AARPWEDKCA MDKEPNSDEV
301: AAESPASHST AVAAITHRDF HLDNRPSPTA HKQSRPPSRQ SPSTPRSKTG RIRPASPRVS NVDDDSRSMT SAQSERCRRH SIAGSSIRDD ESLASSPSVP
401: SYMAATESAR ARSRLPSPLG FENIGTPEKG SVSSTKKRLS FSASPGGVPR RHSGPPKVEI

Best Arabidopsis Sequence Match ( AT5G03040.2 )
(BLAST)

001: MGKKAKWFSS VKKAFSPDSK KSKQKLAEGQ NGVISNPPVV DNVRQSSSSP PPALAPREVR VAEVIVERNR DLSPPSTADA VNVTATDVPV VPSSSAPGVV
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S

Arabidopsis Description

iqd2At5g03040/F15A17_70 [Source:UniProtKB/TrEMBL;Acc:Q93ZH7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.