Factsheet for PGSC0003DMT400038175

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009340.2.1	Tomato	nucleus	71.76	92.06
VIT_16s0098g01070.t01	Wine grape	mitochondrion, nucleus	36.36	40.69
GSMUA_Achr6P02050_001	Banana	cytosol	12.19	40.65
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	34.24	38.39
PGSC0003DMT400031576	Potato	nucleus	35.01	36.49
GSMUA_Achr1P18950_001	Banana	nucleus	32.11	36.24
GSMUA_Achr1P16160_001	Banana	nucleus	31.14	35.94
TraesCS7A01G317400.2	Wheat	nucleus	36.56	34.74
HORVU7Hr1G075720.1	Barley	plasma membrane	36.56	34.62
TraesCSU01G104800.3	Wheat	nucleus	36.36	34.5
TraesCS7B01G218800.3	Wheat	nucleus	36.17	34.31
Os08t0115200-01	Rice	cytosol	35.78	34.07
CDY08131	Canola	nucleus	22.24	33.43
Bra017988.1-P	Field mustard	nucleus	22.44	33.14
Zm00001d049684_P002	Maize	cytosol, mitochondrion	34.43	32.72
CDY05931	Canola	nucleus	22.24	32.67
EES14418	Sorghum	cytosol	36.17	32.58
PGSC0003DMT400029325	Potato	mitochondrion	20.5	31.93
AT3G49380.1	Thale cress	nucleus	20.7	30.4
PGSC0003DMT400010610	Potato	nucleus	22.82	25.65
PGSC0003DMT400027139	Potato	cytosol	22.24	23.91
PGSC0003DMT400004433	Potato	cytosol	21.86	23.54
PGSC0003DMT400045333	Potato	cytosol	20.89	22.93
PGSC0003DMT400050471	Potato	cytosol	17.21	21.87
PGSC0003DMT400021183	Potato	cytosol	17.99	21.43
PGSC0003DMT400068456	Potato	cytosol	12.57	21.38
PGSC0003DMT400023467	Potato	nucleus	18.96	20.9
PGSC0003DMT400006376	Potato	cytosol	16.44	19.91
PGSC0003DMT400039646	Potato	mitochondrion	10.64	18.58
PGSC0003DMT400059119	Potato	cytosol	10.83	18.18
PGSC0003DMT400041427	Potato	cytosol	17.21	16.64
PGSC0003DMT400042121	Potato	cytosol, mitochondrion	14.7	12.32

Protein Annotations

EnsemblPlants:PGSC0003DMT400038175	EnsemblPlantsGene:PGSC0003DMG400014723	EntrezGene:102594740	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	ncoils:Coil	PANTHER:PTHR32295
PANTHER:PTHR32295:SF92	PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PGSC:PGSC0003DMG400014723	RefSeq:XP_015158560.1
SEG:seg	SMART:SM00015	UniParc:UPI000294B2F2	UniProt:M1B6G1	MapMan:35.2	:

Description

Calmodulin binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014723]

Coordinates

chr1:+:6661315..6666017

Molecular Weight (calculated)

58484.6 Da

IEP (calculated)

10.358

GRAVY (calculated)

-0.755

Length

517 amino acids

Sequence
(BLAST)

001: MKKKHIPSYS KQTQGQGTTT TTNDHQLSLV TQDESLLTKC FIGKSIIGGP SWLGLMKKAF RSPIKENDIK SIRRREEAHD QEEEEKKRGK RRWIFRKPTV
101: HETTLIHHNQ DQENAATTSK GNLATIFLPK NADLKQKGAI GVAITRGGSS LSAATTSTIA TDVAIAKTQA TIDITQLTQP PILVKQQCAI LVIQTTFRGY
201: LARKALGALK GVVKLQALIR GHNVRKRAQI TLQCMQSLVR VQNQVCDQRR RLSCEGISCD SMFKEPKSIL ELHLNDKESN SINQASIPDN DGYDHLHALE
301: KIEALLHKAK VAAKKRENTL AHAFSRKMWT SNKDEDSSSN TELDEDLRVF DVIDEKNRKS TSRASCDQPR DRIKNIEIDT ACSYSNSDTE FWRLHHQYYH
401: DHQQKFYSSY VVPSPLSHRA NINALPMTPP LKMKNIQVHS ASPRYRREEN NHHRMALLSH RANVNSSPTA VDQPSYMAAT ASARARERSQ STPRQIPMTP
501: EREKTSSTKK RLSFPIQ

Best Arabidopsis Sequence Match ( AT1G01110.2 )
(BLAST)

001: MGKKNGSSSW LTAVKRAFRS PTKKDHSNDV EEDEEKKREK RRWFRKPATQ ESPVKSSGIS PPAPQEDSLN VNSKPSPETA PSYATTTPPS NAGKPPSAVV
101: PIATSASKTL APRRIYYARE NYAAVVIQTS FRGYLARRAL RALKGLVKLQ ALVRGHNVRK QAKMTLRCMQ ALVRVQSRVL DQRKRLSHDG SRKSAFSDSH
201: AVFESRYLQD LSDRQSMSRE GSSAAEDWDD RPHTIDAVKV MLQRRRDTAL RHDKTNLSQA FSQKMWRTVG NQSTEGHHEV ELEEERPKWL DRWMATRPWD
301: KRASSRASVD QRVSVKTVEI DTSQPYSRTG AGSPSRGQRP SSPSRTSHHY QSRNNFSATP SPAKSRPILI RSASPRCQRD PREDRDRAAY SYTSNTPSLR
401: SNYSFTARSG CSISTTMVNN ASLLPNYMAS TESAKARIRS HSAPRQRPST PERDRAGLVK KRLSYPVPPP AEYEDNNSLR SPSFKSVAGS HFGGMLEQQS
501: NYSSCCTESN GVEISPASTS DFRNWLR

Arabidopsis Description

IQD18IQ-domain 18 [Source:UniProtKB/TrEMBL;Acc:Q9MAM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.