Factsheet for VIT_16s0098g01070.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P02050_001	Banana	cytosol	16.88	50.32
VIT_15s0048g02680.t01	Wine grape	nucleus	59.74	49.55
GSMUA_Achr1P18950_001	Banana	nucleus	48.48	48.91
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	48.27	48.37
GSMUA_Achr1P16160_001	Banana	nucleus	45.45	46.88
VIT_02s0025g02690.t01	Wine grape	mitochondrion, nucleus	54.11	46.82
HORVU7Hr1G075720.1	Barley	plasma membrane	53.25	45.05
TraesCS7A01G317400.2	Wheat	nucleus	52.81	44.85
TraesCSU01G104800.3	Wheat	nucleus	52.6	44.59
TraesCS7B01G218800.3	Wheat	nucleus	52.6	44.59
Os08t0115200-01	Rice	cytosol	51.52	43.83
EES14418	Sorghum	cytosol	51.95	41.81
Zm00001d049684_P002	Maize	cytosol, mitochondrion	48.27	40.99
CDY08131	Canola	nucleus	28.36	38.08
Bra017988.1-P	Field mustard	nucleus	28.79	38.0
CDY05931	Canola	nucleus	28.79	37.78
Solyc01g009340.2.1	Tomato	nucleus	32.03	36.72
PGSC0003DMT400038175	Potato	cytosol	40.69	36.36
AT3G49380.1	Thale cress	nucleus	27.06	35.51
VIT_13s0019g03890.t01	Wine grape	cytosol	30.95	29.67
VIT_08s0040g02360.t01	Wine grape	nucleus	29.0	27.97
VIT_16s0098g01790.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	26.62	26.62
VIT_04s0008g01080.t01	Wine grape	nucleus	24.46	25.17
VIT_06s0009g00210.t01	Wine grape	cytosol	22.29	23.15
VIT_10s0003g00860.t01	Wine grape	cytosol, plastid	14.5	21.9
VIT_19s0014g01690.t01	Wine grape	cytosol	12.99	19.42
VIT_05s0094g00530.t01	Wine grape	cytosol	24.24	18.73

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:100255609	wikigene:100255609	MapMan:35.2	ProteinID:CCB48085	ProteinID:CCB48085.1
InterPro:DUF4005	UniProt:F6H762	EMBL:FN595247	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	EntrezGene:LOC100255609	wikigene:LOC100255609	InterPro:P-loop_NTPase	PFAM:PF00612
PFAM:PF13178	PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF92	SMART:SM00015	SUPFAM:SSF52540
UniParc:UPI0001984F9D	ArrayExpress:VIT_16s0098g01070	EnsemblPlantsGene:VIT_16s0098g01070	EnsemblPlants:VIT_16s0098g01070.t01	RefSeq:XP_002271325	RefSeq:XP_002271325.2
RefSeq:XP_010662925.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr16:+:21341512..21343257

Molecular Weight (calculated)

51633.9 Da

IEP (calculated)

10.543

GRAVY (calculated)

-0.775

Length

462 amino acids

Sequence
(BLAST)

001: MGKIGGAGSW LTAVKRAFRS PSKREEHEQE EEEKKRGKRR WIFRKHSNNN ETGVQLCETR TITTRANSAE TTGTARMAKN PVSEAADAEK RHAIAVAMAT
101: AAAAEAAVAT AKAAVEVARL TRRPSIFVRE HCAAIVIQTA FRGYLARKAL RALKGLVKLQ ALVRGHNVRK RAKKTLRCMQ ALVRVQARVC DQRKRLSLSH
201: EEKIDSIFSD PSSLWESNLL NRKSMSAWDW DDHPHTKKRE EEALAHAFAH QIWRSSRKDQ YHASEGELED KPRRLDRRMV TKHWESTGRS SCDQREHIKT
301: VEVDTSQPYS YSTPIFQRPF HQPPSPITPS PYKIKLFQAH SASPRCHSAA QTPKLGSIYY HGMWSSSSAG AAAMPNYMAS TESAKARARS QSAPRQRAST
401: PERDRPGSAR KRLSFPDPDP FGATGIEGET FGSNFEGSNV SSCCEESHGD EINIQPVILG RG

Best Arabidopsis Sequence Match ( AT1G01110.2 )
(BLAST)

001: MGKKNGSSSW LTAVKRAFRS PTKKDHSNDV EEDEEKKREK RRWFRKPATQ ESPVKSSGIS PPAPQEDSLN VNSKPSPETA PSYATTTPPS NAGKPPSAVV
101: PIATSASKTL APRRIYYARE NYAAVVIQTS FRGYLARRAL RALKGLVKLQ ALVRGHNVRK QAKMTLRCMQ ALVRVQSRVL DQRKRLSHDG SRKSAFSDSH
201: AVFESRYLQD LSDRQSMSRE GSSAAEDWDD RPHTIDAVKV MLQRRRDTAL RHDKTNLSQA FSQKMWRTVG NQSTEGHHEV ELEEERPKWL DRWMATRPWD
301: KRASSRASVD QRVSVKTVEI DTSQPYSRTG AGSPSRGQRP SSPSRTSHHY QSRNNFSATP SPAKSRPILI RSASPRCQRD PREDRDRAAY SYTSNTPSLR
401: SNYSFTARSG CSISTTMVNN ASLLPNYMAS TESAKARIRS HSAPRQRPST PERDRAGLVK KRLSYPVPPP AEYEDNNSLR SPSFKSVAGS HFGGMLEQQS
501: NYSSCCTESN GVEISPASTS DFRNWLR

Arabidopsis Description

IQD18IQ-domain 18 [Source:UniProtKB/TrEMBL;Acc:Q9MAM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.