Factsheet for VIT_16s0098g01790.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16503	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	59.52	60.04
KRH53505	Soybean	cytosol	56.28	58.3
KRH64435	Soybean	nucleus	56.71	56.59
PGSC0003DMT400023467	Potato	nucleus	57.14	56.29
Solyc03g083100.2.1	Tomato	nucleus	56.71	55.86
AT3G49260.3	Thale cress	nucleus	51.73	50.64
CDY05917	Canola	mitochondrion, nucleus	50.22	48.84
Bra017997.1-P	Field mustard	nucleus, plastid	49.78	48.42
CDX86983	Canola	nucleus	48.92	47.58
CDY08120	Canola	mitochondrion, nucleus	48.7	47.47
Bra019589.1-P	Field mustard	nucleus	48.05	46.74
CDY00196	Canola	nucleus	48.05	46.74
PGSC0003DMT400050471	Potato	cytosol	41.13	46.68
GSMUA_Achr10P...	Banana	cytosol	45.02	46.02
Solyc06g052010.1.1	Tomato	cytosol	39.39	45.84
CDY05918	Canola	mitochondrion	27.71	40.76
VIT_13s0019g03890.t01	Wine grape	cytosol	32.03	30.71
VIT_19s0014g01690.t01	Wine grape	cytosol	18.61	27.83
VIT_04s0008g01080.t01	Wine grape	nucleus	26.84	27.62
VIT_10s0003g00860.t01	Wine grape	cytosol, plastid	18.18	27.45
VIT_08s0040g02360.t01	Wine grape	nucleus	28.14	27.14
VIT_16s0098g01070.t01	Wine grape	mitochondrion, nucleus	26.62	26.62
VIT_15s0048g02680.t01	Wine grape	nucleus	32.03	26.57
VIT_06s0009g00210.t01	Wine grape	cytosol	24.89	25.84
VIT_02s0025g02690.t01	Wine grape	mitochondrion, nucleus	29.22	25.28
VIT_05s0094g00530.t01	Wine grape	cytosol	26.84	20.74

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:100245291	wikigene:100245291	MapMan:35.2	ProteinID:CCB48049	ProteinID:CCB48049.1
UniProt:F6H785	EMBL:FN595247	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048
InterPro:IQ_motif_EF-hand-BS	EntrezGene:LOC100245291	wikigene:LOC100245291	PFAM:PF00612	PFscan:PS50096	PANTHER:PTHR32295
PANTHER:PTHR32295:SF33	SMART:SM00015	UniParc:UPI000210A0AE	ArrayExpress:VIT_16s0098g01790	EnsemblPlantsGene:VIT_16s0098g01790	EnsemblPlants:VIT_16s0098g01790.t01
unigene:Vvi.4578	RefSeq:XP_002272529	RefSeq:XP_002272529.1	RefSeq:XP_010662863.1	SEG:seg	:

Description

No Description!

Coordinates

chr16:-:21853417..21856524

Molecular Weight (calculated)

51427.3 Da

IEP (calculated)

10.307

GRAVY (calculated)

-0.972

Length

462 amino acids

Sequence
(BLAST)

001: MGKKGGGWLS SVKKVFKSPS KESPEKKKAD VEKCHNEAPE VVSFEHFPAE SSPDVTNDDS DREEEGSSPV TGDRSHAIAV AVATAAAAEA AVAAAQAAAK
101: VVRLAGYGRH SKEDRAATII QSYYRGYLAR RALRALKGLV RLQALVRGHN VRKQAQMTMR CMQALVRVQA RVRARRLQLA HEKVQQRVED EGERTHEEEQ
201: PKTKIPVKKL EAEGWNGKHQ RSEKMKENQT RKHDAVMKRE RALAYAFSYQ QQESIPSRND GGLNDNEREK SQWGWNWLER WMASQPYHFR QSSPHDPSYM
301: TLPTTDNMSE KTVEMDVISP PGLDNIYTGQ HGQHVVGDSF RTPTDPTRQL KQPSSDNVPS YMAPTKSTRA KFRAQGPTKP RPAPQMPQWN PSTKKAPFLG
401: SGCDSSSSGG GTATTTYPTP RSPSPKANGP RAPARRVGRF NPDSNGAEEW MVHVGGWRHD FG

Best Arabidopsis Sequence Match ( AT3G49260.3 )
(BLAST)

001: MGKKGSGGWF STVKKKVFKS SPKDSKRENN IGSNNADIWQ QQHDTQEVVS FEHFPAESSP EISHDVESTA STPATNVGDR KHAMAVAIAT AAAAEAAVAA
101: AQAAAKVVRL AGYNRQTEED SAAVLIQSHY RGYLARRALR ALKGLVRLQA LVRGNHVRKQ AQMTMKCMQA LVRVQGRVRA RRLQVAHDRF KKQFEEEEKR
201: SGMEKPNKVG FANLKTEREK PKKLHEVNRT SLYQTQGKEK ERSEGMMKRE RALAYAYTYQ RQMQHTNSEE GIGLSSNGPD RNQWAWNWLD HWMSSQPYTG
301: RQTGPGPGPG QYNPPPYPPF PTAAATTTSD DVSEKTVEMD VTTPTSLKGN IIGLIDREYI DLGSYRQGHK QRKSPTHIPS YMAPTASAKA KVRDQGPTVK
401: LQGTSFMPYW NSSTKNGSVN GSGCDSSSSG GAITTGYPGP RSPNPKSDIR RKPVSPSQSP TGFGKRGWRH DH

Arabidopsis Description

iqd21IQ-domain 21 [Source:UniProtKB/TrEMBL;Acc:F4IWT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.