Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05917 | Canola | mitochondrion, nucleus | 88.56 | 88.0 |
| Bra017997.1-P | Field mustard | nucleus, plastid | 88.14 | 87.58 |
| CDY08120 | Canola | mitochondrion, nucleus | 86.23 | 85.86 |
| CDY05918 | Canola | mitochondrion | 56.99 | 85.67 |
| CDY00196 | Canola | nucleus | 83.9 | 83.37 |
| CDX86983 | Canola | nucleus | 83.9 | 83.37 |
| Bra019589.1-P | Field mustard | nucleus | 83.69 | 83.16 |
| KRH53505 | Soybean | cytosol | 50.0 | 52.91 |
| VIT_16s0098g01790.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 50.64 | 51.73 |
| KRH64435 | Soybean | nucleus | 50.0 | 50.97 |
| KRH16503 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 49.15 | 50.66 |
| Solyc03g083100.2.1 | Tomato | nucleus | 47.03 | 47.33 |
| PGSC0003DMT400023467 | Potato | nucleus | 47.03 | 47.33 |
| Solyc06g052010.1.1 | Tomato | cytosol | 35.81 | 42.57 |
| GSMUA_Achr10P... | Banana | cytosol | 39.62 | 41.37 |
| PGSC0003DMT400050471 | Potato | cytosol | 35.59 | 41.28 |
| AT3G52290.1 | Thale cress | cytosol | 26.27 | 28.84 |
| AT2G26180.1 | Thale cress | cytosol | 23.09 | 26.2 |
| AT5G03040.1 | Thale cress | cytosol, plastid | 24.15 | 24.73 |
| AT3G49380.1 | Thale cress | nucleus | 18.22 | 24.43 |
| AT3G22190.2 | Thale cress | cytosol | 21.61 | 24.17 |
| AT1G17480.1 | Thale cress | cytosol | 18.86 | 23.99 |
| AT1G72670.1 | Thale cress | cytosol | 20.13 | 22.95 |
| AT2G33990.1 | Thale cress | cytosol | 12.29 | 22.05 |
| AT4G00820.1 | Thale cress | mitochondrion, nucleus | 24.36 | 21.54 |
| AT4G10640.1 | Thale cress | nucleus | 19.28 | 21.51 |
| AT3G15050.1 | Thale cress | plastid | 11.23 | 20.46 |
| AT1G01110.2 | Thale cress | nucleus | 22.46 | 20.11 |
| AT3G59690.2 | Thale cress | nucleus | 21.82 | 19.92 |
| AT3G09710.2 | Thale cress | nucleus | 19.07 | 19.23 |
| AT2G26410.2 | Thale cress | cytosol | 21.19 | 18.98 |
| AT2G43680.1 | Thale cress | nucleus | 21.61 | 15.25 |
Protein Annotations
| Gene3D:1.20.5.190 | MapMan:35.2 | EntrezGene:824087 | ProteinID:AEE78518.1 | ArrayExpress:AT3G49260 | EnsemblPlantsGene:AT3G49260 |
| RefSeq:AT3G49260 | TAIR:AT3G49260 | RefSeq:AT3G49260-TAIR-G | EnsemblPlants:AT3G49260.3 | TAIR:AT3G49260.3 | Unigene:At.19623 |
| ncoils:Coil | InterPro:DUF4005 | UniProt:F4IWT1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | RefSeq:NP_001190039.1 | PFAM:PF00612 | PFAM:PF13178 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50096 | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF33 |
| SMART:SM00015 | UniParc:UPI0001E92E4A | Symbol:iqd21 | SEG:seg | : | : |
Description
iqd21IQ-domain 21 [Source:UniProtKB/TrEMBL;Acc:F4IWT1]
Coordinates
chr3:+:18262399..18265979
Molecular Weight (calculated)
52196.3 Da
IEP (calculated)
10.536
GRAVY (calculated)
-0.903
Length
472 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKGSGGWF STVKKKVFKS SPKDSKRENN IGSNNADIWQ QQHDTQEVVS FEHFPAESSP EISHDVESTA STPATNVGDR KHAMAVAIAT AAAAEAAVAA
101: AQAAAKVVRL AGYNRQTEED SAAVLIQSHY RGYLARRALR ALKGLVRLQA LVRGNHVRKQ AQMTMKCMQA LVRVQGRVRA RRLQVAHDRF KKQFEEEEKR
201: SGMEKPNKVG FANLKTEREK PKKLHEVNRT SLYQTQGKEK ERSEGMMKRE RALAYAYTYQ RQMQHTNSEE GIGLSSNGPD RNQWAWNWLD HWMSSQPYTG
301: RQTGPGPGPG QYNPPPYPPF PTAAATTTSD DVSEKTVEMD VTTPTSLKGN IIGLIDREYI DLGSYRQGHK QRKSPTHIPS YMAPTASAKA KVRDQGPTVK
401: LQGTSFMPYW NSSTKNGSVN GSGCDSSSSG GAITTGYPGP RSPNPKSDIR RKPVSPSQSP TGFGKRGWRH DH
101: AQAAAKVVRL AGYNRQTEED SAAVLIQSHY RGYLARRALR ALKGLVRLQA LVRGNHVRKQ AQMTMKCMQA LVRVQGRVRA RRLQVAHDRF KKQFEEEEKR
201: SGMEKPNKVG FANLKTEREK PKKLHEVNRT SLYQTQGKEK ERSEGMMKRE RALAYAYTYQ RQMQHTNSEE GIGLSSNGPD RNQWAWNWLD HWMSSQPYTG
301: RQTGPGPGPG QYNPPPYPPF PTAAATTTSD DVSEKTVEMD VTTPTSLKGN IIGLIDREYI DLGSYRQGHK QRKSPTHIPS YMAPTASAKA KVRDQGPTVK
401: LQGTSFMPYW NSSTKNGSVN GSGCDSSSSG GAITTGYPGP RSPNPKSDIR RKPVSPSQSP TGFGKRGWRH DH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.