Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016042.1-P | Field mustard | cytosol | 89.86 | 90.29 |
| CDX72935 | Canola | cytosol | 52.9 | 83.27 |
| AT1G17480.1 | Thale cress | cytosol | 63.77 | 71.16 |
| Solyc03g121760.2.1 | Tomato | cytosol | 46.86 | 45.22 |
| PGSC0003DMT400006376 | Potato | cytosol | 46.38 | 44.96 |
| AT2G26180.1 | Thale cress | cytosol | 44.69 | 44.47 |
| KRH10035 | Soybean | cytosol | 44.2 | 43.99 |
| KRH23285 | Soybean | nucleus | 42.51 | 42.72 |
| KRH44124 | Soybean | mitochondrion | 42.51 | 41.81 |
| KRH47099 | Soybean | cytosol | 43.0 | 38.61 |
| Os05t0541100-01 | Rice | plastid | 36.72 | 37.25 |
| TraesCS3B01G280900.1 | Wheat | cytosol | 38.41 | 36.98 |
| TraesCS3A01G251400.1 | Wheat | cytosol | 38.16 | 36.66 |
| TraesCS3D01G251800.2 | Wheat | cytosol | 38.65 | 36.12 |
| Os01t0708700-01 | Rice | cytosol | 38.41 | 36.05 |
| EES03502 | Sorghum | mitochondrion | 37.68 | 35.7 |
| Zm00001d043691_P001 | Maize | mitochondrion | 37.2 | 35.08 |
| HORVU3Hr1G066840.2 | Barley | cytosol | 35.99 | 34.98 |
| Zm00001d038861_P001 | Maize | cytosol, plastid | 36.23 | 34.97 |
| TraesCS1B01G379600.1 | Wheat | mitochondrion | 31.88 | 31.73 |
| TraesCS1A01G362400.1 | Wheat | mitochondrion | 30.43 | 30.81 |
| AT3G22190.2 | Thale cress | cytosol | 29.71 | 29.15 |
| AT2G33990.1 | Thale cress | cytosol | 18.12 | 28.52 |
| KXG22437 | Sorghum | mitochondrion, plastid | 37.44 | 28.39 |
| TraesCS1D01G367300.2 | Wheat | mitochondrion, plastid | 30.92 | 28.38 |
| AT3G15050.1 | Thale cress | plastid | 17.15 | 27.41 |
| HORVU1Hr1G079590.12 | Barley | cytosol | 30.19 | 26.71 |
| AT3G52290.1 | Thale cress | cytosol | 24.15 | 23.26 |
| AT4G10640.1 | Thale cress | nucleus | 21.98 | 21.51 |
| AT5G03040.1 | Thale cress | cytosol, plastid | 23.19 | 20.82 |
| AT3G49260.3 | Thale cress | nucleus | 22.95 | 20.13 |
| AT3G49380.1 | Thale cress | nucleus | 16.43 | 19.32 |
| AT4G00820.1 | Thale cress | mitochondrion, nucleus | 24.4 | 18.91 |
| AT1G01110.2 | Thale cress | nucleus | 23.67 | 18.6 |
| AT3G09710.2 | Thale cress | nucleus | 19.57 | 17.31 |
| AT3G59690.2 | Thale cress | nucleus | 20.29 | 16.25 |
| AT2G26410.2 | Thale cress | cytosol | 18.6 | 14.61 |
| AT2G43680.1 | Thale cress | nucleus | 19.81 | 12.26 |
Protein Annotations
| Gene3D:1.20.5.190 | MapMan:35.2 | EntrezGene:843599 | ProteinID:AAG51853.1 | ProteinID:AEE35359.1 | EMBL:AK175909 |
| ArrayExpress:AT1G72670 | EnsemblPlantsGene:AT1G72670 | RefSeq:AT1G72670 | TAIR:AT1G72670 | RefSeq:AT1G72670-TAIR-G | EnsemblPlants:AT1G72670.1 |
| TAIR:AT1G72670.1 | EMBL:BT010652 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | RefSeq:NP_177411.1 | PFAM:PF00612 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS50096 |
| PANTHER:PTHR32295 | PANTHER:PTHR32295:SF25 | UniProt:Q9CAI2 | SMART:SM00015 | UniParc:UPI00000A4B73 | Symbol:iqd8 |
| SEG:seg | : | : | : | : | : |
Description
iqd8At1g72670 [Source:UniProtKB/TrEMBL;Acc:Q9CAI2]
Coordinates
chr1:-:27356459..27358863
Molecular Weight (calculated)
45896.1 Da
IEP (calculated)
10.950
GRAVY (calculated)
-0.855
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSGNWIKS LITNKKNITD DQEKNIKKKW KLWRTSSEGL ISSSKGFKSR GGSYGTPSLG SDPPSFSADD SFTAAVAAVI RAPPKDFFLV KREWAATRIQ
101: AAFRAFLARQ ALRALKAVVR IQAIFRGRQV RKQADVTLRC MQALVRVQAR VRAHCNRGPS DGQELEKPSD QQKDDPAKQA EKGWCDSPGS INEVRTKLQM
201: RQEGAIKRER AMVYALTHQP RTCPSPAKAS KQGSVKKNNG SCKSSPGWNW LDRWVADRPW EGRLMEGPTN SSENARKSES SVSEHDTVQV RKNNLTTRVL
301: ARPPPMSSSA TSSESSSTSQ SPVPFSGSFL EEGGYYRKPS YMSLTQSIKA KQRRSGSSSS CSKTPFEKKQ SMSYNGDVNV RRSAGSDPLN NQWTDLYPPA
401: QVTGRHMWAK SQRG
101: AAFRAFLARQ ALRALKAVVR IQAIFRGRQV RKQADVTLRC MQALVRVQAR VRAHCNRGPS DGQELEKPSD QQKDDPAKQA EKGWCDSPGS INEVRTKLQM
201: RQEGAIKRER AMVYALTHQP RTCPSPAKAS KQGSVKKNNG SCKSSPGWNW LDRWVADRPW EGRLMEGPTN SSENARKSES SVSEHDTVQV RKNNLTTRVL
301: ARPPPMSSSA TSSESSSTSQ SPVPFSGSFL EEGGYYRKPS YMSLTQSIKA KQRRSGSSSS CSKTPFEKKQ SMSYNGDVNV RRSAGSDPLN NQWTDLYPPA
401: QVTGRHMWAK SQRG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.