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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • plastid 1
  • cytosol 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra005462.1-P Field mustard cytosol, plastid 79.47 78.87
CDY17214 Canola cytosol, plastid 78.71 78.11
CDY27925 Canola plastid 77.57 76.98
CDY62768 Canola cytosol 77.19 73.29
Bra021888.1-P Field mustard plastid 64.64 65.64
AT3G15050.1 Thale cress plastid 44.49 45.17
AT2G26180.1 Thale cress cytosol 34.22 21.63
AT3G22190.2 Thale cress cytosol 31.56 19.67
AT5G03040.1 Thale cress cytosol, plastid 33.84 19.31
AT3G52290.1 Thale cress cytosol 30.42 18.6
AT1G72670.1 Thale cress cytosol 28.52 18.12
AT3G09710.2 Thale cress nucleus 30.8 17.31
AT1G17480.1 Thale cress cytosol 22.05 15.63
AT4G10640.1 Thale cress nucleus 23.57 14.66
AT2G26410.2 Thale cress cytosol 27.38 13.66
AT3G59690.2 Thale cress nucleus 25.1 12.77
AT3G49380.1 Thale cress nucleus 16.73 12.5
AT3G49260.3 Thale cress nucleus 22.05 12.29
AT4G00820.1 Thale cress mitochondrion, nucleus 24.71 12.17
AT1G01110.2 Thale cress nucleus 23.95 11.95
AT2G43680.1 Thale cress nucleus 24.71 9.72
Protein Annotations
MapMan:35.1EntrezGene:817960UniProt:A0A178VWC3ProteinID:AEC08904.1EMBL:AK229389ArrayExpress:AT2G33990
EnsemblPlantsGene:AT2G33990RefSeq:AT2G33990TAIR:AT2G33990RefSeq:AT2G33990-TAIR-GEnsemblPlants:AT2G33990.1TAIR:AT2G33990.1
GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005623GO:GO:0005886
GO:GO:0008150GO:GO:0016020InterPro:IPR000048InterPro:IQ_motif_EF-hand-BSRefSeq:NP_180946.2ProteinID:OAP10168.1
PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PFscan:PS50096PANTHER:PTHR32295PANTHER:PTHR32295:SF9UniProt:Q0WNP8UniParc:UPI00005DC2CFSymbol:iqd9
SEG:seg:::::
Description
iqd9IQ-domain 9 [Source:UniProtKB/TrEMBL;Acc:Q0WNP8]
Coordinates
chr2:-:14360255..14362511
Molecular Weight (calculated)
30143.4 Da
IEP (calculated)
11.355
GRAVY (calculated)
-0.919
Length
263 amino acids
Sequence
(BLAST)
001: MGSGNLIKAI IRLKKSKQGT EKKKTSAVKP KKGSKKKGTS LVTRSEDWAA TRIQTAFKAY KARKSLRRLK GIARAKLSTE KQSVKNQAVV TLRYLHSWSK
101: IQSEIKARRV CMVTEWRLKN KRLEHQQKLE AKLHDVEVEW NGGSETKDEI LERILQREEA TIKRERALAY AFSHQWKADG KTQWLGSYEL GNTNWGWSWK
201: ERWISARPWE VRYSVTPKKP KSSKTDSNSP AKRTVSLSSV PAKTPFPGAR NTVKPRRLSF PGA
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.