Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033443.1-P | Field mustard | cytosol | 82.09 | 79.33 |
| CDY23202 | Canola | cytosol | 81.63 | 78.88 |
| CDX95328 | Canola | cytosol | 81.4 | 78.65 |
| KRH57858 | Soybean | cytosol | 52.79 | 50.0 |
| KRH04761 | Soybean | cytosol | 53.49 | 47.62 |
| AT5G03040.1 | Thale cress | cytosol, plastid | 44.65 | 41.65 |
| KRG91856 | Soybean | cytosol | 45.81 | 40.29 |
| KRH34906 | Soybean | cytosol | 45.12 | 40.17 |
| AT3G09710.2 | Thale cress | nucleus | 37.91 | 34.83 |
| AT2G26410.2 | Thale cress | cytosol | 38.84 | 31.69 |
| AT2G33990.1 | Thale cress | cytosol | 18.6 | 30.42 |
| AT2G26180.1 | Thale cress | cytosol | 27.44 | 28.37 |
| AT3G15050.1 | Thale cress | plastid | 16.28 | 27.03 |
| AT3G22190.2 | Thale cress | cytosol | 26.51 | 27.01 |
| AT4G10640.1 | Thale cress | nucleus | 26.28 | 26.71 |
| AT3G49260.3 | Thale cress | nucleus | 28.84 | 26.27 |
| AT3G49380.1 | Thale cress | nucleus | 21.4 | 26.14 |
| AT1G72670.1 | Thale cress | cytosol | 23.26 | 24.15 |
| AT3G59690.2 | Thale cress | nucleus | 28.37 | 23.6 |
| AT4G00820.1 | Thale cress | mitochondrion, nucleus | 29.3 | 23.6 |
| AT1G01110.2 | Thale cress | nucleus | 27.67 | 22.58 |
| AT1G17480.1 | Thale cress | cytosol | 19.3 | 22.37 |
| AT2G43680.1 | Thale cress | nucleus | 29.07 | 18.68 |
Protein Annotations
| MapMan:35.1 | EntrezGene:824394 | UniProt:A0A178VCT8 | ProteinID:AEE78927.1 | ArrayExpress:AT3G52290 | EnsemblPlantsGene:AT3G52290 |
| RefSeq:AT3G52290 | TAIR:AT3G52290 | RefSeq:AT3G52290-TAIR-G | EnsemblPlants:AT3G52290.1 | TAIR:AT3G52290.1 | Unigene:At.25539 |
| EMBL:BT002936 | EMBL:BT005639 | ProteinID:CAC07920.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| GO:GO:0005886 | GO:GO:0008150 | GO:GO:0016020 | InterPro:IPR000048 | Symbol:IQD3 | InterPro:IQ_motif_EF-hand-BS |
| RefSeq:NP_190797.1 | ProteinID:OAP03746.1 | PFAM:PF00612 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50096 | PANTHER:PTHR32295 |
| PANTHER:PTHR32295:SF28 | UniProt:Q9FT53 | SMART:SM00015 | UniParc:UPI000000BE4A | SEG:seg | : |
Description
IQD3IQD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCT8]
Coordinates
chr3:+:19393768..19396411
Molecular Weight (calculated)
48120.1 Da
IEP (calculated)
11.285
GRAVY (calculated)
-0.870
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKSWFSAVK KALSPEPKQK KEQKPHKSKK WFGKSKKLDV TNSGAAYSPR TVKDAKLKEI EEQQSRHAYS VAIATAAAAE AAVAAAQAAA EVVRLSALSR
101: FPGKSMEEIA AIKIQTAFRG YMARRALRAL RGLVRLKSLV QGKCVRRQAT STLQSMQTLA RVQYQIRERR LRLSEDKQAL TRQLQQKHNK DFDKTGENWN
201: DSTLSREKVE ANMLNKQVAT MRREKALAYA FSHQNTWKNS TKMGSQTFMD PNNPHWGWSW LERWMAARPN ENHSLTPDNA EKDSSARSVA SRAMSEMIPR
301: GKNLSPRGKT PNSRRGSSPR VRQVPSEDSN SIVSFQSEQP CNRRHSTCGS IPSTRDDESF TSSFSQSVPG YMAPTQAAKA RARFSNLSPL SSEKTAKKRL
401: SFSGSPKTVR RFSGPPKLES NVTKKDTNLA
101: FPGKSMEEIA AIKIQTAFRG YMARRALRAL RGLVRLKSLV QGKCVRRQAT STLQSMQTLA RVQYQIRERR LRLSEDKQAL TRQLQQKHNK DFDKTGENWN
201: DSTLSREKVE ANMLNKQVAT MRREKALAYA FSHQNTWKNS TKMGSQTFMD PNNPHWGWSW LERWMAARPN ENHSLTPDNA EKDSSARSVA SRAMSEMIPR
301: GKNLSPRGKT PNSRRGSSPR VRQVPSEDSN SIVSFQSEQP CNRRHSTCGS IPSTRDDESF TSSFSQSVPG YMAPTQAAKA RARFSNLSPL SSEKTAKKRL
401: SFSGSPKTVR RFSGPPKLES NVTKKDTNLA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.