CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033443.1-P	Field mustard	cytosol	99.33	99.33
CDX95328	Canola	cytosol	97.53	97.53
AT3G52290.1	Thale cress	cytosol	78.88	81.63
KRH57858	Soybean	cytosol	49.89	48.9
KRH04761	Soybean	cytosol	51.01	47.0
CDY11238	Canola	cytosol, plastid	41.12	44.31
CDX80849	Canola	cytosol, plastid	41.35	43.19
CDY04876	Canola	nucleus, plastid	42.47	42.47
CDY10410	Canola	cytosol, plastid	42.02	42.12
CDY55696	Canola	nucleus, plastid	40.67	41.42
KRG91856	Soybean	cytosol	45.17	41.1
KRH34906	Soybean	cytosol	44.49	40.99
CDX70333	Canola	cytosol	41.35	38.33
CDY38525	Canola	cytosol	33.93	36.56
CDX83237	Canola	cytosol	36.63	32.15
CDY27925	Canola	plastid	17.98	30.19
CDY17214	Canola	cytosol, plastid	17.98	30.19
CDY07937	Canola	nucleus	31.91	29.71
CDY37387	Canola	cytosol	25.39	29.43
CDX73992	Canola	nucleus	31.24	29.14
CDY22198	Canola	cytosol	35.28	28.09
CDY10618	Canola	cytosol	25.62	28.08
CDY32322	Canola	cytosol, plastid	16.18	27.8
CDY41307	Canola	cytosol	34.16	27.79
CDX77034	Canola	cytosol	24.72	27.78
CDY35313	Canola	nucleus	24.72	27.71
CDY24286	Canola	cytosol	24.72	27.23
CDY62768	Canola	cytosol	16.85	27.08
CDX92933	Canola	cytosol, plastid	24.04	26.68
CDY20099	Canola	cytosol	15.73	26.52
CDX96427	Canola	cytosol	14.38	26.34
CDY15200	Canola	nucleus	29.44	25.64
CDY05931	Canola	nucleus	20.22	25.57
CDY05917	Canola	mitochondrion, nucleus	27.19	25.47
CDX90011	Canola	nucleus	28.99	25.39
CDY08120	Canola	mitochondrion, nucleus	26.74	25.11
CDX72935	Canola	cytosol	14.83	25.1
CDY08131	Canola	nucleus	19.1	24.71
CDY05111	Canola	nucleus	23.82	24.71
CDX90766	Canola	nucleus	23.6	24.36
CDX86983	Canola	nucleus	25.84	24.21
CDY00196	Canola	nucleus	25.39	23.79
CDY30433	Canola	cytosol	24.04	23.78
CDY05984	Canola	nucleus	26.07	23.43
CDX71881	Canola	nucleus	25.84	23.28
CDY23391	Canola	cytosol	24.04	23.21
CDX91859	Canola	mitochondrion, nucleus	26.97	22.64
CDY39505	Canola	cytosol	20.0	22.53
CDY69140	Canola	mitochondrion, nucleus	26.52	22.48
CDY58749	Canola	cytosol	22.92	22.37
CDX92931	Canola	mitochondrion, nucleus	12.81	22.35
CDY48305	Canola	nucleus	17.98	21.33
CDY26241	Canola	nucleus	17.98	21.33
CDX83468	Canola	plasma membrane	25.62	20.69
CDY44247	Canola	nucleus	24.49	19.6
CDY24282	Canola	mitochondrion	13.03	19.02
CDX79809	Canola	nucleus	25.17	18.73
CDY66694	Canola	nucleus	24.94	18.53
CDY05918	Canola	mitochondrion	12.13	17.2
CDX72934	Canola	nucleus, plastid	3.37	14.71
CDX96426	Canola	nucleus, plastid	3.37	14.71

Protein Annotations

EnsemblPlants:CDY23202	EnsemblPlantsGene:GSBRNA2T00021742001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048
InterPro:IQ_motif_EF-hand-BS	ncoils:Coil	PANTHER:PTHR32295	PANTHER:PTHR32295:SF28	PFAM:PF00612	PFscan:PS50096
ProteinID:CDY23202	ProteinID:CDY23202.1	SEG:seg	SMART:SM00015	UniParc:UPI0004EE3637	UniProt:A0A078GDS1
MapMan:35.1	:	:	:	:	:

Description

BnaA04g05570DBnaA04g05570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDS1]

Coordinates

chrLK032141:+:315339..317567

Molecular Weight (calculated)

49026.2 Da

IEP (calculated)

11.392

GRAVY (calculated)

-0.781

Length

445 amino acids

Sequence
(BLAST)

001: MGKSWFAVVK KAFTPRPKQT KDEQKPHKAK KWFGKSKKLD VTTPGVAGSL PSNTLCVARE AKLKEIEEEQ SRHAYSVAVA TAAAADAAVA AAQAAAEVVR
101: LTAVSRFPGK SKEDIAAIKI QTAFRGYMAR RALRALRGLV RLNSLVQGKG VRRQATSTLQ SMQTLARLQY QIRERRLRLS EDKQACARKL QQKHNKDFSK
201: IGGNWDDSTL SRERVEANML NKQVATMRRE KALAYAYTHQ NTWKGSSISQ TFMDPNNPHW GWSWLERWMA ARPNENQSVT LTPDTADKTS SAANSVASRA
301: RSEIIPRGRK PSPKRITPPS SRRMSSPGVR QAPSGDEDSK SRLSIQSEQP GNRRHSIGGS LPSTRDDESS ITSSSVSQSV PGYMALTQAA KARARLSNLS
401: PLGSEKTAKK RLSFSDSPNK TVRRFSGPPK LESSGNNKNK DSVLA

Best Arabidopsis Sequence Match ( AT3G52290.1 )
(BLAST)

001: MGKSWFSAVK KALSPEPKQK KEQKPHKSKK WFGKSKKLDV TNSGAAYSPR TVKDAKLKEI EEQQSRHAYS VAIATAAAAE AAVAAAQAAA EVVRLSALSR
101: FPGKSMEEIA AIKIQTAFRG YMARRALRAL RGLVRLKSLV QGKCVRRQAT STLQSMQTLA RVQYQIRERR LRLSEDKQAL TRQLQQKHNK DFDKTGENWN
201: DSTLSREKVE ANMLNKQVAT MRREKALAYA FSHQNTWKNS TKMGSQTFMD PNNPHWGWSW LERWMAARPN ENHSLTPDNA EKDSSARSVA SRAMSEMIPR
301: GKNLSPRGKT PNSRRGSSPR VRQVPSEDSN SIVSFQSEQP CNRRHSTCGS IPSTRDDESF TSSFSQSVPG YMAPTQAAKA RARFSNLSPL SSEKTAKKRL
401: SFSGSPKTVR RFSGPPKLES NVTKKDTNLA

Arabidopsis Description

IQD3IQD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.