Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000717.1-P | Field mustard | nucleus | 99.54 | 99.31 |
| CDY05111 | Canola | nucleus | 95.59 | 96.04 |
| AT4G10640.1 | Thale cress | nucleus | 78.65 | 80.14 |
| GSMUA_Achr6P02050_001 | Banana | cytosol | 16.24 | 45.16 |
| PGSC0003DMT400031576 | Potato | nucleus | 45.71 | 39.72 |
| Solyc08g083240.2.1 | Tomato | nucleus | 44.78 | 39.47 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 42.0 | 39.26 |
| GSMUA_Achr1P18950_001 | Banana | nucleus | 41.07 | 38.65 |
| VIT_02s0025g02690.t01 | Wine grape | mitochondrion, nucleus | 47.56 | 38.39 |
| GSMUA_Achr1P16160_001 | Banana | nucleus | 39.21 | 37.72 |
| CDX90011 | Canola | nucleus | 43.62 | 37.01 |
| Os08t0115200-01 | Rice | cytosol | 46.17 | 36.65 |
| CDY15200 | Canola | nucleus | 43.39 | 36.59 |
| TraesCS7B01G218800.3 | Wheat | nucleus | 45.01 | 35.6 |
| TraesCSU01G104800.3 | Wheat | nucleus | 45.01 | 35.6 |
| TraesCS7A01G317400.2 | Wheat | nucleus | 44.78 | 35.48 |
| CDX91859 | Canola | mitochondrion, nucleus | 43.62 | 35.47 |
| CDY69140 | Canola | mitochondrion, nucleus | 43.16 | 35.43 |
| HORVU7Hr1G075720.1 | Barley | plasma membrane | 44.78 | 35.35 |
| Zm00001d049684_P002 | Maize | cytosol, mitochondrion | 44.32 | 35.11 |
| EES14418 | Sorghum | cytosol | 45.94 | 34.49 |
| CDY08131 | Canola | nucleus | 22.27 | 27.91 |
| CDY05931 | Canola | nucleus | 22.27 | 27.27 |
| CDX96427 | Canola | cytosol | 14.62 | 25.93 |
| CDY37387 | Canola | cytosol | 22.97 | 25.78 |
| CDY35313 | Canola | nucleus | 23.2 | 25.19 |
| CDX72935 | Canola | cytosol | 15.31 | 25.1 |
| CDX77034 | Canola | cytosol | 22.97 | 25.0 |
| CDY10618 | Canola | cytosol | 23.43 | 24.88 |
| CDY17214 | Canola | cytosol, plastid | 15.08 | 24.53 |
| CDX92933 | Canola | cytosol, plastid | 22.51 | 24.19 |
| CDY27925 | Canola | plastid | 14.85 | 24.15 |
| CDY24286 | Canola | cytosol | 22.51 | 24.01 |
| CDY23202 | Canola | cytosol | 24.36 | 23.6 |
| CDX95328 | Canola | cytosol | 24.13 | 23.37 |
| CDY32322 | Canola | cytosol, plastid | 13.92 | 23.17 |
| CDY20099 | Canola | cytosol | 13.23 | 21.59 |
| CDY11238 | Canola | cytosol, plastid | 20.65 | 21.55 |
| CDY39505 | Canola | cytosol | 19.72 | 21.52 |
| CDY10410 | Canola | cytosol, plastid | 22.04 | 21.4 |
| CDY48305 | Canola | nucleus | 18.56 | 21.33 |
| CDY26241 | Canola | nucleus | 18.56 | 21.33 |
| CDY62768 | Canola | cytosol | 13.69 | 21.3 |
| CDX80849 | Canola | cytosol, plastid | 20.88 | 21.13 |
| CDY04876 | Canola | nucleus, plastid | 21.81 | 21.12 |
| CDY58749 | Canola | cytosol | 22.04 | 20.83 |
| CDY55696 | Canola | nucleus, plastid | 21.11 | 20.82 |
| CDY30433 | Canola | cytosol | 21.11 | 20.22 |
| CDX71881 | Canola | nucleus | 22.97 | 20.04 |
| CDY05984 | Canola | nucleus | 22.97 | 20.0 |
| CDY23391 | Canola | cytosol | 21.35 | 19.96 |
| CDX70333 | Canola | cytosol | 21.58 | 19.38 |
| CDY38525 | Canola | cytosol | 17.87 | 18.64 |
| CDY00196 | Canola | nucleus | 20.42 | 18.53 |
| CDY05917 | Canola | mitochondrion, nucleus | 20.42 | 18.53 |
| CDX86983 | Canola | nucleus | 20.19 | 18.32 |
| CDY08120 | Canola | mitochondrion, nucleus | 19.95 | 18.14 |
| CDX96426 | Canola | nucleus, plastid | 4.18 | 17.65 |
| CDX72934 | Canola | nucleus, plastid | 4.18 | 17.65 |
| CDX92931 | Canola | mitochondrion, nucleus | 9.98 | 16.86 |
| CDY07937 | Canola | nucleus | 18.56 | 16.74 |
| CDX83237 | Canola | cytosol | 19.03 | 16.17 |
| CDX73992 | Canola | nucleus | 17.87 | 16.14 |
| CDX79809 | Canola | nucleus | 22.27 | 16.05 |
| CDX83468 | Canola | plasma membrane | 20.19 | 15.79 |
| CDY66694 | Canola | nucleus | 21.81 | 15.69 |
| CDY44247 | Canola | nucleus | 19.95 | 15.47 |
| CDY22198 | Canola | cytosol | 19.72 | 15.21 |
| CDY41307 | Canola | cytosol | 19.03 | 14.99 |
| CDY24282 | Canola | mitochondrion | 9.98 | 14.1 |
| CDY05918 | Canola | mitochondrion | 9.98 | 13.69 |
Protein Annotations
| EnsemblPlants:CDX90766 | EnsemblPlantsGene:GSBRNA2T00151462001 | Gene3D:1.20.5.190 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:DUF4005 | InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | InterPro:P-loop_NTPase | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF50 |
| PFAM:PF00612 | PFAM:PF13178 | PFscan:PS50096 | ProteinID:CDX90766 | ProteinID:CDX90766.1 | SEG:seg |
| SMART:SM00015 | SUPFAM:SSF52540 | UniParc:UPI0004EF4B24 | MapMan:35.2 | : | : |
Description
BnaA03g24460D
Coordinates
chrLK031864:+:412362..414546
Molecular Weight (calculated)
49139.4 Da
IEP (calculated)
10.578
GRAVY (calculated)
-0.802
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKNGTSWL TVVKKILWSP SKDSDKKSYK KEADYNKKKE KKGWIFRKTK VENTDSVTDT IPKAEKEEKD KPAVAEIVKL TATPGFLRRH WAAIIIQTAF
101: RGYLAKRAFG ALKGIVKLQA LVRGHNVRNQ AKHTLRCIKA LVRVHDQVLS HHHQQQQRSR VLSSSPSSNC YDIEARRNSM FAESNGFWDS KTYLQDIRSR
201: RSLSRDMSRC TNEFVVNQEE SQSILQKRLE IAIEREKAHA LALSNQIRSR SYRNQSAGDD RELLERTKWL DRWMATKQWD NTITIPTTRD QVKTLEMDTN
301: ISTTTTHHHR SYPATPPSCR ATRTFGVRSA SPRIPCSSPS SMVQPNYMSA TESAKAKART QSTPRRRPVI PAKKRLCYAE EGSLSLRSPS LKSAYNGCLW
401: GEHESDYSCC YGDGLAGKVS PCSTSDLRWL K
101: RGYLAKRAFG ALKGIVKLQA LVRGHNVRNQ AKHTLRCIKA LVRVHDQVLS HHHQQQQRSR VLSSSPSSNC YDIEARRNSM FAESNGFWDS KTYLQDIRSR
201: RSLSRDMSRC TNEFVVNQEE SQSILQKRLE IAIEREKAHA LALSNQIRSR SYRNQSAGDD RELLERTKWL DRWMATKQWD NTITIPTTRD QVKTLEMDTN
301: ISTTTTHHHR SYPATPPSCR ATRTFGVRSA SPRIPCSSPS SMVQPNYMSA TESAKAKART QSTPRRRPVI PAKKRLCYAE EGSLSLRSPS LKSAYNGCLW
401: GEHESDYSCC YGDGLAGKVS PCSTSDLRWL K
001: MAKKNGTSWF TAVKKILWSP SKDSDKKTHH HKETDIKRKE KKGWIFRKTK LETTNSVLQH TVRTVEAEEK EKPPVIVSSV EEGVTEIVKL TATPGFIRRH
101: WAAIIIQTAF RGYLSRRALR ALKGIVKLQA LVRGNNVRNQ AKLTLRCIKA LVRVQDQVLN HHQQQRSRVL LSPPSRNYNI EARRNSMFAE SNGFWDTKTY
201: LQDIRSRRSL SRDMNRCNNE FYSEETELIL QKKLEIAIKR EKAQALALSN QIRSRSSRNQ SAGDDRELLE RTQWLDRWMA TKQWDDTITN STNVRDPIKT
301: LEAVTTHHHQ RSYPATPPSC RASRSVMVRS ASPRIPCSPS SMQPNYMSAT ESAKAKARTQ STPRRRPMTA KKRLCYAEEE SLRSPSFKSC LWGDHESDYS
401: CCYGDGFAGK ISPCSTTELR WLK
101: WAAIIIQTAF RGYLSRRALR ALKGIVKLQA LVRGNNVRNQ AKLTLRCIKA LVRVQDQVLN HHQQQRSRVL LSPPSRNYNI EARRNSMFAE SNGFWDTKTY
201: LQDIRSRRSL SRDMNRCNNE FYSEETELIL QKKLEIAIKR EKAQALALSN QIRSRSSRNQ SAGDDRELLE RTQWLDRWMA TKQWDDTITN STNVRDPIKT
301: LEAVTTHHHQ RSYPATPPSC RASRSVMVRS ASPRIPCSPS SMQPNYMSAT ESAKAKARTQ STPRRRPMTA KKRLCYAEEE SLRSPSFKSC LWGDHESDYS
401: CCYGDGFAGK ISPCSTTELR WLK
Arabidopsis Description
IQD16At4g10640 [Source:UniProtKB/TrEMBL;Acc:Q7XA83]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.