Factsheet for Bra000717.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90766	Canola	nucleus	99.31	99.54
AT4G10640.1	Thale cress	nucleus	78.47	80.14
GSMUA_Achr6P02050_001	Banana	cytosol	16.44	45.81
PGSC0003DMT400031576	Potato	nucleus	45.83	39.92
Solyc08g083240.2.1	Tomato	nucleus	44.91	39.67
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	42.13	39.48
GSMUA_Achr1P18950_001	Banana	nucleus	41.2	38.86
VIT_02s0025g02690.t01	Wine grape	mitochondrion, nucleus	47.69	38.58
GSMUA_Achr1P16160_001	Banana	nucleus	39.35	37.95
Os08t0115200-01	Rice	cytosol	46.3	36.83
Bra000930.1-P	Field mustard	mitochondrion, nucleus	43.52	35.81
TraesCSU01G104800.3	Wheat	nucleus	45.14	35.78
TraesCS7B01G218800.3	Wheat	nucleus	45.14	35.78
Bra033284.1-P	Field mustard	nucleus	43.52	35.74
TraesCS7A01G317400.2	Wheat	nucleus	44.91	35.66
HORVU7Hr1G075720.1	Barley	plasma membrane	44.91	35.53
Zm00001d049684_P002	Maize	cytosol, mitochondrion	44.44	35.29
EES14418	Sorghum	cytosol	46.06	34.67
Bra017988.1-P	Field mustard	nucleus	22.45	27.71
Bra031331.1-P	Field mustard	cytosol	23.38	26.3
Bra034294.1-P	Field mustard	nucleus	23.38	25.44
Bra005462.1-P	Field mustard	cytosol, plastid	15.28	24.91
Bra033443.1-P	Field mustard	cytosol	24.31	23.6
Bra001855.1-P	Field mustard	cytosol	18.06	22.74
Bra016042.1-P	Field mustard	cytosol	21.06	22.09
Bra021888.1-P	Field mustard	plastid	13.19	22.01
Bra025971.1-P	Field mustard	nucleus	18.75	21.6
Bra021588.1-P	Field mustard	cytosol, plastid	12.96	21.21
Bra028854.1-P	Field mustard	nucleus, plastid	21.76	21.12
Bra023846.1-P	Field mustard	cytosol	19.68	20.38
Bra007471.1-P	Field mustard	nucleus	22.92	19.96
Bra009554.1-P	Field mustard	cytosol	21.3	19.53
Bra019589.1-P	Field mustard	nucleus	20.83	18.95
Bra017997.1-P	Field mustard	nucleus, plastid	20.6	18.74
Bra034081.1-P	Field mustard	nucleus	18.75	18.24
Bra037689.1-P	Field mustard	cytosol	21.76	17.84
Bra001299.1-P	Field mustard	nucleus	18.29	16.7
Bra000318.1-P	Field mustard	nucleus	21.99	15.97
Bra004776.1-P	Field mustard	nucleus	22.45	15.52

Protein Annotations

Gene3D:1.20.5.190	MapMan:35.2	EnsemblPlantsGene:Bra000717	EnsemblPlants:Bra000717.1	EnsemblPlants:Bra000717.1-P	InterPro:DUF4005
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0016020	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	UniProt:M4C939	InterPro:P-loop_NTPase
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF50	SMART:SM00015
SUPFAM:SSF52540	UniParc:UPI000254035F	SEG:seg	:	:	:

Description

AT4G10640 (E=8e-144) IQD16 | IQD16 (IQ-domain 16); calmodulin binding

Coordinates

chrA03:+:12646371..12648452

Molecular Weight (calculated)

49232.5 Da

IEP (calculated)

10.578

GRAVY (calculated)

-0.821

Length

432 amino acids

Sequence
(BLAST)

001: MAKKNGTSWL TVVKKILWSP SKDSDKKSYK KEADYNKKKE KKGWIFRKTK VENTDSVTDT IPKAEKEEKD KPAVAEIVKL TATPGFLRRH WAAIIIQTAF
101: RGYLAKRAFG ALKGIVKLQA LVRGHNVRNQ AKHTLRCIKA LVRVQDQVLS HHHQQQQQRS RVLSSSPSSN CYDIEARRNS MFAESNGFWD SKTYLQDIRS
201: RRSLSRDMSR CTNEFVVNQE ESQSSLQKRL EIAIEREKAH ALALSNQIRS RSYRNQSAGD DRELLERTKW LDRWMATKQW DNTITIPTTR DQVKTLEMDT
301: NISTTTTHHH RSYPATPPSC RATRTFGVRS ASPRIPCSSP SSMVQPNYMS ATESAKAKAR TQSTPRRRPV IPAKKRLCYA EEGSLSLRSP SLKSAYNGCL
401: WGEHESDYSC CYGDGLAGKV SPCSTSDLRW LK

Best Arabidopsis Sequence Match ( AT4G10640.1 )
(BLAST)

001: MAKKNGTSWF TAVKKILWSP SKDSDKKTHH HKETDIKRKE KKGWIFRKTK LETTNSVLQH TVRTVEAEEK EKPPVIVSSV EEGVTEIVKL TATPGFIRRH
101: WAAIIIQTAF RGYLSRRALR ALKGIVKLQA LVRGNNVRNQ AKLTLRCIKA LVRVQDQVLN HHQQQRSRVL LSPPSRNYNI EARRNSMFAE SNGFWDTKTY
201: LQDIRSRRSL SRDMNRCNNE FYSEETELIL QKKLEIAIKR EKAQALALSN QIRSRSSRNQ SAGDDRELLE RTQWLDRWMA TKQWDDTITN STNVRDPIKT
301: LEAVTTHHHQ RSYPATPPSC RASRSVMVRS ASPRIPCSPS SMQPNYMSAT ESAKAKARTQ STPRRRPMTA KKRLCYAEEE SLRSPSFKSC LWGDHESDYS
401: CCYGDGFAGK ISPCSTTELR WLK

Arabidopsis Description

IQD16At4g10640 [Source:UniProtKB/TrEMBL;Acc:Q7XA83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.