Factsheet for Bra017988.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08131	Canola	nucleus	96.57	98.26
AT3G49380.1	Thale cress	nucleus	75.43	75.0
GSMUA_Achr6P02050_001	Banana	cytosol	13.71	30.97
VIT_16s0098g01070.t01	Wine grape	mitochondrion, nucleus	38.0	28.79
GSMUA_Achr1P18950_001	Banana	nucleus	34.0	25.98
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	33.71	25.6
GSMUA_Achr1P16160_001	Banana	nucleus	32.0	25.0
TraesCS7A01G317400.2	Wheat	nucleus	36.29	23.35
TraesCS7B01G218800.3	Wheat	nucleus	36.29	23.3
HORVU7Hr1G075720.1	Barley	plasma membrane	36.29	23.26
TraesCSU01G104800.3	Wheat	nucleus	36.0	23.12
Solyc01g009340.2.1	Tomato	nucleus	26.57	23.08
Os08t0115200-01	Rice	cytosol	35.71	23.02
Bra000717.1-P	Field mustard	nucleus	27.71	22.45
PGSC0003DMT400038175	Potato	cytosol	33.14	22.44
Bra033284.1-P	Field mustard	nucleus	33.71	22.43
Bra034294.1-P	Field mustard	nucleus	24.86	21.91
EES14418	Sorghum	cytosol	35.71	21.78
Zm00001d049684_P002	Maize	cytosol, mitochondrion	33.43	21.51
Bra000930.1-P	Field mustard	mitochondrion, nucleus	32.0	21.33
Bra033443.1-P	Field mustard	cytosol	24.86	19.55
Bra001855.1-P	Field mustard	cytosol	19.14	19.53
Bra031331.1-P	Field mustard	cytosol	21.14	19.27
Bra017997.1-P	Field mustard	nucleus, plastid	26.0	19.16
Bra028854.1-P	Field mustard	nucleus, plastid	22.86	17.98
Bra005462.1-P	Field mustard	cytosol, plastid	13.43	17.74
Bra016042.1-P	Field mustard	cytosol	20.86	17.72
Bra025971.1-P	Field mustard	nucleus	18.86	17.6
Bra021588.1-P	Field mustard	cytosol, plastid	13.14	17.42
Bra019589.1-P	Field mustard	nucleus	23.43	17.26
Bra023846.1-P	Field mustard	cytosol	20.29	17.03
Bra007471.1-P	Field mustard	nucleus	23.14	16.33
Bra009554.1-P	Field mustard	cytosol	21.71	16.14
Bra037689.1-P	Field mustard	cytosol	22.0	14.61
Bra021888.1-P	Field mustard	plastid	10.57	14.29
Bra034081.1-P	Field mustard	nucleus	17.14	13.51
Bra004776.1-P	Field mustard	nucleus	24.0	13.44
Bra001299.1-P	Field mustard	nucleus	16.86	12.47
Bra000318.1-P	Field mustard	nucleus	20.29	11.93

Protein Annotations

EnsemblPlants:Bra017988.1	EnsemblPlants:Bra017988.1-P	EnsemblPlantsGene:Bra017988	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	InterPro:P-loop_NTPase	PANTHER:PTHR32295
PANTHER:PTHR32295:SF92	PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	SEG:seg	SMART:SM00015
SUPFAM:SSF52540	UniParc:UPI000253F1BA	UniProt:M4DNA1	MapMan:35.2	:	:

Description

AT3G49380 (E=3e-131) iqd15 | iqd15 (IQ-domain 15); calmodulin binding

Coordinates

chrA06:+:9298584..9300254

Molecular Weight (calculated)

40174.6 Da

IEP (calculated)

10.911

GRAVY (calculated)

-0.897

Length

350 amino acids

Sequence
(BLAST)

001: MGKNGGSSWL TAVKNVFRSP EKKCPRRRER QQDNGLVQED EEEQQQQTKR GKRRWLFKKA SSDSCARDVG INIKNAVNTN SASVDAIAVD ETEKKASPTA
101: KEAVFFCRTS VYLKRHLAAI LIQTAYRGCL ARKAFKALKG VVLLQALVRG HNVRRRASIT LFRVQALVRV QARVLDHRKK LTASPGDGTT LSRAFSKQMW
201: RITAREAHSE SELEDKRPSR LNRFGYQEIG RRLSTDQTIV EPVKIVEIDT YNTYSHHQQL NDRTPRGNSR VTRQGHSIPN YMSTTASTVA RFRPQSAPRQ
301: RSNQTGLDDN EPRLQLVRKR LSFHKDIPQS HGYFWYDKKT DDHDHEDVQH

Best Arabidopsis Sequence Match ( AT3G49380.1 )
(BLAST)

001: MGKTDGSSWF TAVKNVFRSP EKLIPRRINR RQDNDLVEEV EDELHQRPKR RKRRWLFKKV SSDPCAINVG INTTSTAINA IAAEETEKTV SPAAKETVFF
101: CRTSVYLKRH VAAILIQTAF RGCLARTAVR ALKGVVKLQA LVRGHNVRRR TSITLQRVQA LVRIQALALD HRKKLTTKLG DEISYSHAFS KQMWRTMERE
201: AHSESELEDK RPSRLNGYGY QETGRRMSTD QAIVEPVKIV EIDKYNNTYS HHQQLNDQTP RGNSFVTRQA HSIPNYMSTT ASTVARFRRP QSVPKQRSNR
301: TCLDNNEPRL RLVRKRLSFH NDNPQSYGYI AGDGYFWYDI DKRTNAHEDF QY

Arabidopsis Description

iqd15IQ-domain 15 [Source:UniProtKB/TrEMBL;Acc:Q9SG11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.