Factsheet for TraesCSU01G104800.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G317400.2	Wheat	nucleus	98.53	98.71
TraesCS7B01G218800.3	Wheat	nucleus	98.35	98.35
HORVU7Hr1G075720.1	Barley	plasma membrane	98.35	98.17
Os08t0115200-01	Rice	cytosol	83.67	83.98
EES14418	Sorghum	cytosol	80.73	76.66
Zm00001d049684_P002	Maize	cytosol, mitochondrion	76.51	76.65
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	62.02	73.32
GSMUA_Achr1P18950_001	Banana	nucleus	61.1	72.71
GSMUA_Achr1P16160_001	Banana	nucleus	57.25	69.64
Solyc10g005000.2.1	Tomato	nucleus	41.28	57.11
VIT_15s0048g02680.t01	Wine grape	nucleus	58.17	56.91
KRH47821	Soybean	nucleus	55.23	55.13
PGSC0003DMT400029325	Potato	mitochondrion	33.58	55.12
KRH06386	Soybean	mitochondrion, nucleus	55.23	54.73
VIT_02s0025g02690.t01	Wine grape	mitochondrion, nucleus	52.84	53.93
VIT_16s0098g01070.t01	Wine grape	mitochondrion, nucleus	44.59	52.6
AT4G00820.1	Thale cress	mitochondrion, nucleus	50.46	51.5
CDY15200	Canola	nucleus	48.26	51.47
CDX90011	Canola	nucleus	47.71	51.18
Bra033284.1-P	Field mustard	nucleus	48.62	50.38
AT1G01110.2	Thale cress	nucleus	48.44	50.09
CDY69140	Canola	mitochondrion, nucleus	47.52	49.33
CDX91859	Canola	mitochondrion, nucleus	47.89	49.25
PGSC0003DMT400031576	Potato	nucleus	44.4	48.79
Solyc08g083240.2.1	Tomato	nucleus	43.67	48.67
Bra000930.1-P	Field mustard	mitochondrion, nucleus	46.24	48.0
CDY05111	Canola	nucleus	35.6	45.22
Bra000717.1-P	Field mustard	nucleus	35.78	45.14
CDX90766	Canola	nucleus	35.6	45.01
AT4G10640.1	Thale cress	nucleus	33.39	43.03
Solyc01g009340.2.1	Tomato	nucleus	27.89	37.72
PGSC0003DMT400038175	Potato	cytosol	34.5	36.36
CDY08131	Canola	nucleus	22.94	36.34
Bra017988.1-P	Field mustard	nucleus	23.12	36.0
CDY05931	Canola	nucleus	23.12	35.8
AT3G49380.1	Thale cress	nucleus	22.2	34.38
TraesCSU01G076200.1	Wheat	cytosol, mitochondrion	19.08	24.19

Protein Annotations

EnsemblPlants:TraesCSU01G104800.3	EnsemblPlantsGene:TraesCSU01G104800	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF50	PFAM:PF00612
PFAM:PF13178	PFscan:PS50096	SEG:seg	SMART:SM00015	MapMan:35.2	:

Description

No Description!

Coordinates

chrUn:-:92480093..92482183

Molecular Weight (calculated)

59412.1 Da

IEP (calculated)

11.397

GRAVY (calculated)

-0.795

Length

545 amino acids

Sequence
(BLAST)

001: MGNKKGGSSW LTAVKRAFRS PSKEDSPKKS ARLREDPDAD EDKTKRERRR WLFRRSSSPS PSPASAPAPP EQQQSASRSA PAPAVTDEQR HAIALAVATA
101: ATAEAAVATA QAAAEVVRLT RPSSSFVREH YAAIVVQTAF RGYLARRALR ALKGLVKLQA LVRGHNVRKQ ANMTLRCMQA LVRVQARVRD QRLRLSQESL
201: SAAGAAACGS SKSSYSVDTS AFWDSKYTQE YAERRSVERS RDGSSFAAED WDDRPRTIEE IQAMLQTRKD AALKRERALS YAFSHQIWRN AAPSVEEEMN
301: VDGQPRWAER WMASRASFDT NRSSARTAAA AAAAAPGRAS TDHRDQVKTL EIDTARPFSY STPRRHAPPS QHGNGSPMHR AHHQASVTPS PGKARPPIQV
401: RSASPRVERG TSGGGGSYTP SLHSQRHASS GSAVPNYMAA TESAKARIRS QSAPRQRPAT PERDRPQTAY NPAGGSAKKR LSFPVPQDPY GVGYAQSLRS
501: PSFKSATGRF TSEQRSTVSS LSCAESVGGE PVSPSSTTDL RRWLR

Best Arabidopsis Sequence Match ( AT4G00820.1 )
(BLAST)

001: MGKKSGSSSS WLTAVKRAFR SPTKKEHNNN AHGNEVDEDE DKKKEKRRWL FRKSTNHDSP VKTSGVGKDA PAQKSTETTT IINPTVLSSV TEQRYDASTP
101: PATVSAASET HPPSTTKELP NLTRRTYTAR EDYAAVVIQT GFRGYLARRA LRALKGLVKL QALVRGHNVR KQAKMTLRCM QALVRVQSRV LDQRKRLSHD
201: GSRKSAFSDT QSVLESRYLQ EISDRRSMSR EGSSIAEDWD DRPHTIEEVK AMLQQRRDNA LRRESNNSIS QAFSHQVRRT RGSYSTGDEY EEERPKWLDR
301: WMASKPWDKR ASTDQRVPPV YKTVEIDTSQ PYLTRGNSRT GASPSRSQRP SSPSRTSHHY QQHNFSSATP SPAKSRPIQI RSASPRIQRD DRSAYNYTSN
401: TPSLRSNYSF TARSGYSVCT TTTTATNAAL PNYMAITESA KARIRSQSAP RQRPSTPEKE RISSARKRLS FPVPPLPQQM DGQSLRSPSF KSIGGSQLGA
501: LEQQSNYSSC CTESLGGGGE ISPASTSDYR RWLR

Arabidopsis Description

iqd17IQ-domain 17 [Source:UniProtKB/TrEMBL;Acc:F4JHN2]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.