CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69140	Canola	mitochondrion, nucleus	95.09	96.0
Bra000930.1-P	Field mustard	mitochondrion, nucleus	93.96	94.86
AT4G00820.1	Thale cress	mitochondrion, nucleus	82.08	81.46
CDX90011	Canola	nucleus	65.85	68.7
CDY15200	Canola	nucleus	65.85	68.3
Solyc10g005000.2.1	Tomato	nucleus	42.64	57.36
KRH06386	Soybean	mitochondrion, nucleus	58.49	56.36
KRH47821	Soybean	nucleus	57.55	55.86
PGSC0003DMT400029325	Potato	mitochondrion	34.91	55.72
VIT_15s0048g02680.t01	Wine grape	nucleus	58.11	55.3
GSMUA_Achr1P18950_001	Banana	nucleus	43.21	50.0
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	43.02	49.46
TraesCSU01G104800.3	Wheat	nucleus	49.25	47.89
TraesCS7A01G317400.2	Wheat	nucleus	49.06	47.79
Os08t0115200-01	Rice	cytosol	48.87	47.7
HORVU7Hr1G075720.1	Barley	plasma membrane	49.06	47.62
TraesCS7B01G218800.3	Wheat	nucleus	48.87	47.52
GSMUA_Achr1P16160_001	Banana	nucleus	40.0	47.32
GSMUA_Achr6P02050_001	Banana	cytosol	13.58	46.45
EES14418	Sorghum	cytosol	48.49	44.77
Zm00001d049684_P002	Maize	cytosol, mitochondrion	45.66	44.49
CDY05111	Canola	nucleus	35.85	44.29
CDX90766	Canola	nucleus	35.47	43.62
CDY08131	Canola	nucleus	21.89	33.72
CDY05931	Canola	nucleus	21.7	32.67
CDY35313	Canola	nucleus	21.13	28.21
CDX77034	Canola	cytosol	20.75	27.78
CDX96427	Canola	cytosol	12.45	27.16
CDY23202	Canola	cytosol	22.64	26.97
CDY11238	Canola	cytosol, plastid	20.94	26.88
CDX95328	Canola	cytosol	22.26	26.52
CDX80849	Canola	cytosol, plastid	21.13	26.29
CDY37387	Canola	cytosol	18.87	26.04
CDY24286	Canola	cytosol	19.81	25.99
CDY10410	Canola	cytosol, plastid	21.7	25.9
CDX72935	Canola	cytosol	12.83	25.86
CDY04876	Canola	nucleus, plastid	21.51	25.62
CDY10618	Canola	cytosol	19.62	25.62
CDX92933	Canola	cytosol, plastid	19.25	25.44
CDY55696	Canola	nucleus, plastid	20.94	25.4
CDY32322	Canola	cytosol, plastid	11.89	24.32
CDY17214	Canola	cytosol, plastid	12.08	24.15
CDY27925	Canola	plastid	11.89	23.77
CDY05917	Canola	mitochondrion, nucleus	21.13	23.58
CDX70333	Canola	cytosol	21.32	23.54
CDY20099	Canola	cytosol	11.7	23.48
CDX71881	Canola	nucleus	21.89	23.48
CDY39505	Canola	cytosol	17.36	23.29
CDY05984	Canola	nucleus	21.7	23.23
CDY08120	Canola	mitochondrion, nucleus	20.57	23.0
CDX86983	Canola	nucleus	20.57	22.95
CDY00196	Canola	nucleus	20.57	22.95
CDY62768	Canola	cytosol	11.7	22.38
CDY23391	Canola	cytosol	19.43	22.34
CDY30433	Canola	cytosol	18.87	22.22
CDY58749	Canola	cytosol	19.06	22.15
CDY48305	Canola	nucleus	15.28	21.6
CDY26241	Canola	nucleus	15.09	21.33
CDY38525	Canola	cytosol	15.47	19.85
CDX79809	Canola	nucleus	21.32	18.9
CDX73992	Canola	nucleus	16.79	18.66
CDY66694	Canola	nucleus	20.75	18.36
CDX83237	Canola	cytosol	17.55	18.34
CDX92931	Canola	mitochondrion, nucleus	8.68	18.04
CDX83468	Canola	plasma membrane	18.68	17.97
CDY05918	Canola	mitochondrion	10.57	17.83
CDY07937	Canola	nucleus	16.04	17.78
CDY22198	Canola	cytosol	18.68	17.71
CDY41307	Canola	cytosol	18.11	17.55
CDY44247	Canola	nucleus	18.11	17.27
CDY24282	Canola	mitochondrion	8.87	15.41
CDX96426	Canola	nucleus, plastid	2.64	13.73
CDX72934	Canola	nucleus, plastid	2.64	13.73

Protein Annotations

EnsemblPlants:CDX91859	EnsemblPlantsGene:GSBRNA2T00153476001	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF50	PFAM:PF00612
PFAM:PF13178	PFscan:PS50096	ProteinID:CDX91859	ProteinID:CDX91859.1	SEG:seg	SMART:SM00015
UniParc:UPI0004EB3618	MapMan:35.2	:	:	:	:

Description

BnaC03g31610D

Coordinates

chrLK031870:+:436184..438313

Molecular Weight (calculated)

59159.0 Da

IEP (calculated)

10.879

GRAVY (calculated)

-0.995

Length

530 amino acids

Sequence
(BLAST)

001: MGKKSGSSSS SWLTAVKRAF RSPTKKEHNN NNNINAHGNE AEEDDDKKRE KRRWLFRKTT NHDSPAKTTG AVKDGSAPKP VETAAINTNA SSSVSEQRNA
101: APPPPTTVSV VSELPQATAE LPNIPSRSYS AREIHAAIII QTCFRGYLAR RALRALKGLV KLQALVRGHN VRKQAKMTLR CMQALVRVQS RVLDQRKRLS
201: HDGTRKSAFS DTHSVLESRY LQDISDRRSM PREGSSIAED WEDRPQTIQE VKAMLQERRD NSLSKAFSQQ IRRTRGSQSI GEEEEERPKW LDRWMSSKPW
301: DKRASTDQRP PVYKTVEIDT SQPYLTRAHS RTGASPSRSQ RPDTPSRTSH HYNHQHSFSS ATPSPAKSRP IQIRSASPRI QRDDRSAYSY TSNTPSLRSN
401: YSFTARSGYS VCTTTTLPNY MAITESAKAR IRSQSAPRQR PLTPEKDRGG SARKRLSYPV PPQPPMEVGG GYCGDSNSQS LRSPSLKSIG GSQLGALEQQ
501: SNYSSCYTES VGGGGEISPA STSDRRWLRF

Best Arabidopsis Sequence Match ( AT4G00820.1 )
(BLAST)

001: MGKKSGSSSS WLTAVKRAFR SPTKKEHNNN AHGNEVDEDE DKKKEKRRWL FRKSTNHDSP VKTSGVGKDA PAQKSTETTT IINPTVLSSV TEQRYDASTP
101: PATVSAASET HPPSTTKELP NLTRRTYTAR EDYAAVVIQT GFRGYLARRA LRALKGLVKL QALVRGHNVR KQAKMTLRCM QALVRVQSRV LDQRKRLSHD
201: GSRKSAFSDT QSVLESRYLQ EISDRRSMSR EGSSIAEDWD DRPHTIEEVK AMLQQRRDNA LRRESNNSIS QAFSHQVRRT RGSYSTGDEY EEERPKWLDR
301: WMASKPWDKR ASTDQRVPPV YKTVEIDTSQ PYLTRGNSRT GASPSRSQRP SSPSRTSHHY QQHNFSSATP SPAKSRPIQI RSASPRIQRD DRSAYNYTSN
401: TPSLRSNYSF TARSGYSVCT TTTTATNAAL PNYMAITESA KARIRSQSAP RQRPSTPEKE RISSARKRLS FPVPPLPQQM DGQSLRSPSF KSIGGSQLGA
501: LEQQSNYSSC CTESLGGGGE ISPASTSDYR RWLR

Arabidopsis Description

iqd17IQ-domain 17 [Source:UniProtKB/TrEMBL;Acc:F4JHN2]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.