CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35313	Canola	nucleus	97.22	96.98
Bra034294.1-P	Field mustard	nucleus	96.72	96.47
AT2G26180.1	Thale cress	cytosol	86.62	82.45
Solyc08g062940.2.1	Tomato	cytosol	47.98	61.49
VIT_04s0008g01080.t01	Wine grape	nucleus	67.42	59.47
PGSC0003DMT400021183	Potato	cytosol	59.85	54.61
KRH15576	Soybean	cytosol	57.07	54.2
KRH61522	Soybean	cytosol	61.11	53.78
KRH05433	Soybean	cytosol	55.81	53.51
KRH52206	Soybean	cytosol	59.85	52.67
CDX96427	Canola	cytosol	31.06	50.62
CDX72935	Canola	cytosol	32.07	48.29
GSMUA_Achr6P04930_001	Banana	cytosol	48.99	47.78
Os01t0194200-01	Rice	cytosol	52.78	47.29
TraesCS3B01G124000.1	Wheat	cytosol	51.77	47.23
TraesCS3D01G107700.1	Wheat	cytosol	51.77	47.13
OQU86150	Sorghum	cytosol	52.78	47.07
GSMUA_Achr2P16650_001	Banana	nucleus	49.75	46.46
TraesCS3A01G105600.1	Wheat	cytosol, nucleus, peroxisome	51.01	46.12
Zm00001d039471_P001	Maize	cytosol	52.02	45.78
GSMUA_Achr7P09640_001	Banana	endoplasmic reticulum	46.21	44.42
GSMUA_Achr10P...	Banana	cytosol	46.97	43.97
HORVU3Hr1G019240.2	Barley	mitochondrion, peroxisome	51.26	41.01
GSMUA_Achr2P15730_001	Banana	cytosol	44.44	39.91
CDY26241	Canola	nucleus	37.63	39.73
CDY48305	Canola	nucleus	37.63	39.73
CDY27925	Canola	plastid	22.98	34.34
CDY17214	Canola	cytosol, plastid	22.73	33.96
CDY37387	Canola	cytosol	32.58	33.59
CDY24286	Canola	cytosol	33.59	32.92
CDX92933	Canola	cytosol, plastid	33.08	32.67
CDY32322	Canola	cytosol, plastid	21.21	32.43
CDY10618	Canola	cytosol	33.08	32.27
CDY20099	Canola	cytosol	21.21	31.82
CDY62768	Canola	cytosol	21.97	31.41
CDY58749	Canola	cytosol	34.09	29.61
CDY39505	Canola	cytosol	29.04	29.11
CDX92931	Canola	mitochondrion, nucleus	17.17	26.67
CDY11238	Canola	cytosol, plastid	27.27	26.15
CDX80849	Canola	cytosol, plastid	28.03	26.06
CDY04876	Canola	nucleus, plastid	28.54	25.39
CDY08131	Canola	nucleus	21.72	25.0
CDY55696	Canola	nucleus, plastid	27.53	24.94
CDY23202	Canola	cytosol	27.78	24.72
CDX95328	Canola	cytosol	27.78	24.72
CDY10410	Canola	cytosol, plastid	27.53	24.55
CDX96426	Canola	nucleus, plastid	6.31	24.51
CDX72934	Canola	nucleus, plastid	6.31	24.51
CDY05931	Canola	nucleus	21.72	24.43
CDY05111	Canola	nucleus	25.0	23.08
CDX90766	Canola	nucleus	25.0	22.97
CDX70333	Canola	cytosol	27.53	22.71
CDY05917	Canola	mitochondrion, nucleus	27.02	22.53
CDY08120	Canola	mitochondrion, nucleus	26.77	22.36
CDX86983	Canola	nucleus	26.52	22.11
CDY15200	Canola	nucleus	28.28	21.92
CDY00196	Canola	nucleus	26.01	21.68
CDX90011	Canola	nucleus	27.78	21.65
CDY38525	Canola	cytosol	22.47	21.55
CDY69140	Canola	mitochondrion, nucleus	27.78	20.95
CDX91859	Canola	mitochondrion, nucleus	27.78	20.75
CDY24282	Canola	mitochondrion	15.91	20.66
CDY30433	Canola	cytosol	21.72	19.11
CDY05918	Canola	mitochondrion	14.9	18.79
CDX83237	Canola	cytosol	23.74	18.54
CDY23391	Canola	cytosol	21.46	18.44
CDX71881	Canola	nucleus	22.73	18.22
CDY05984	Canola	nucleus	21.97	17.58
CDY07937	Canola	nucleus	20.45	16.95
CDX73992	Canola	nucleus	19.95	16.56
CDY22198	Canola	cytosol	22.98	16.28
CDX83468	Canola	plasma membrane	21.97	15.79
CDY41307	Canola	cytosol	21.72	15.72
CDY44247	Canola	nucleus	21.46	15.29
CDX79809	Canola	nucleus	21.72	14.38
CDY66694	Canola	nucleus	20.96	13.86

Protein Annotations

EnsemblPlants:CDX77034	EnsemblPlantsGene:GSBRNA2T00127604001	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF86	PFAM:PF00612	PFscan:PS50096
ProteinID:CDX77034	ProteinID:CDX77034.1	SEG:seg	SMART:SM00015	UniParc:UPI0004EC31A9	MapMan:35.1

Description

BnaC04g38290D

Coordinates

chrLK031809:-:593193..594792

Molecular Weight (calculated)

44542.3 Da

IEP (calculated)

11.474

GRAVY (calculated)

-0.734

Length

396 amino acids

Sequence
(BLAST)

001: MGASGKWVKS IMGLKKAEKN EIEKGNSGKN KKWKLWRNPS GDLASSWKGI RHGRSESVSY SAAVATVLRA PPKDFKAVRE EWAAIRIQTA FRGFLARRAL
101: RALKGIVRLQ ALVRGRQVRK QAAVTLRCMQ ALVRVQARVR ARRVRMTVQG QAVQKLLDEH RSKSDLLKEV EEGWCDRKGT VDDIKTKLQQ RQDGAFKRER
201: ALAYALAQKQ WRSIPSSNLK TNSSISYLKS QEFDKNSWGW SWLERWMAAR PWETRLMDAT DAATPPTKHM KSPEVVKVRR NNVTTRVSAR PPPHMSSSSS
301: GYDFNVSPGS TTPASGTTGL VSDNSSKNKP SYMSMTESTK AKRRTNHVIR QSMDEFQFMN NSGLFTGDLK TSSPVSSDPS YVTNFSKPFG VSTRRG

Best Arabidopsis Sequence Match ( AT2G26180.1 )
(BLAST)

001: MGASGKWVKS IIGLKKLEKD EIEKGNGKNK KWKLWRTTSV DSWKGFRGKH RSDSDGVDSS TVYSAAVATV LRAPPKDFKA VREEWAAIRI QTAFRGFLAR
101: RALRALKGIV RLQALVRGRQ VRKQAAVTLR CMQALVRVQA RVRARRVRMT VEGQAVQKLL DEHRTKSDLL KEVEEGWCDR KGTVDDIKSK LQQRQEGAFK
201: RERALAYALA QKQWRSTTSS NLKTNSSISY LKSQEFDKNS WGWSWLERWM AARPWETRLM DTVDTAATPP PLPHKHLKSP ETADVVQVRR NNVTTRVSAK
301: PPPHMLSSSP GYEFNESSGS SSICTSTTPV SGKTGLVSDN SSSQAKKHKP SYMSLTESTK AKRRTNRGLR QSMDEFQFMK NSGMFTGELK TSPSSDPFVS
401: FSKPLGVPTR FEKPRG

Arabidopsis Description

IQD6At2g26180 [Source:UniProtKB/TrEMBL;Acc:O64852]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.