CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017997.1-P	Field mustard	nucleus, plastid	98.1	97.89
CDY05918	Canola	mitochondrion	64.35	97.13
CDY05917	Canola	mitochondrion, nucleus	95.78	95.58
AT3G49260.3	Thale cress	nucleus	85.86	86.23
CDX86983	Canola	nucleus	82.7	82.53
CDY00196	Canola	nucleus	82.49	82.32
KRH53505	Soybean	cytosol	46.41	49.33
VIT_16s0098g01790.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	47.47	48.7
KRH64435	Soybean	nucleus	46.2	47.3
KRH16503	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	45.36	46.94
PGSC0003DMT400023467	Potato	nucleus	44.73	45.2
Solyc03g083100.2.1	Tomato	nucleus	44.51	44.99
Solyc06g052010.1.1	Tomato	cytosol	33.76	40.3
GSMUA_Achr10P...	Banana	cytosol	37.76	39.6
PGSC0003DMT400050471	Potato	cytosol	33.54	39.07
CDX96427	Canola	cytosol	14.56	28.4
CDY11238	Canola	cytosol, plastid	23.63	27.12
CDX77034	Canola	cytosol	22.36	26.77
CDX95328	Canola	cytosol	25.11	26.74
CDY23202	Canola	cytosol	25.11	26.74
CDX72935	Canola	cytosol	14.77	26.62
CDY04876	Canola	nucleus, plastid	24.89	26.52
CDY35313	Canola	nucleus	22.15	26.45
CDX92933	Canola	cytosol, plastid	22.15	26.18
CDX80849	Canola	cytosol, plastid	23.42	26.06
CDY37387	Canola	cytosol	21.1	26.04
CDY24286	Canola	cytosol	21.94	25.74
CDY10618	Canola	cytosol	21.73	25.37
CDY48305	Canola	nucleus	20.04	25.33
CDY26241	Canola	nucleus	20.04	25.33
CDY55696	Canola	nucleus, plastid	23.21	25.17
CDY05931	Canola	nucleus	18.57	25.0
CDY27925	Canola	plastid	13.92	24.91
CDY17214	Canola	cytosol, plastid	13.92	24.91
CDY10410	Canola	cytosol, plastid	23.21	24.77
CDY08131	Canola	nucleus	17.72	24.42
CDX70333	Canola	cytosol	23.21	22.92
CDY62768	Canola	cytosol	13.29	22.74
CDY39505	Canola	cytosol	18.57	22.28
CDY38525	Canola	cytosol	19.2	22.03
CDY15200	Canola	nucleus	23.0	21.33
CDY58749	Canola	cytosol	20.46	21.27
CDX90011	Canola	nucleus	22.36	20.87
CDY32322	Canola	cytosol, plastid	11.39	20.85
CDY69140	Canola	mitochondrion, nucleus	22.78	20.57
CDX91859	Canola	mitochondrion, nucleus	23.0	20.57
CDY05111	Canola	nucleus	18.57	20.51
CDY20099	Canola	cytosol	11.39	20.45
CDX90766	Canola	nucleus	18.14	19.95
CDY05984	Canola	nucleus	20.46	19.6
CDY23391	Canola	cytosol	18.99	19.52
CDX71881	Canola	nucleus	20.25	19.43
CDY30433	Canola	cytosol	18.14	19.11
CDX83237	Canola	cytosol	20.25	18.93
CDX92931	Canola	mitochondrion, nucleus	9.49	17.65
CDX72934	Canola	nucleus, plastid	3.59	16.67
CDX96426	Canola	nucleus, plastid	3.59	16.67
CDX73992	Canola	nucleus	16.03	15.93
CDY07937	Canola	nucleus	16.03	15.9
CDX83468	Canola	plasma membrane	18.14	15.61
CDY22198	Canola	cytosol	18.35	15.56
CDY41307	Canola	cytosol	17.93	15.54
CDY24282	Canola	mitochondrion	9.92	15.41
CDX79809	Canola	nucleus	19.41	15.38
CDY66694	Canola	nucleus	18.99	15.03
CDY44247	Canola	nucleus	17.51	14.93

Protein Annotations

EnsemblPlants:CDY08120	EnsemblPlantsGene:GSBRNA2T00125401001	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	ncoils:Coil	PANTHER:PTHR32295	PANTHER:PTHR32295:SF33
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	ProteinID:CDY08120	ProteinID:CDY08120.1	SEG:seg
SMART:SM00015	UniParc:UPI0004EEA6BC	UniProt:A0A078F0Y3	MapMan:35.2	:	:

Description

BnaA06g16060DBnaA06g16060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F0Y3]

Coordinates

chrLK031983:+:483539..487560

Molecular Weight (calculated)

52743.2 Da

IEP (calculated)

10.411

GRAVY (calculated)

-0.816

Length

474 amino acids

Sequence
(BLAST)

001: MGKKGSGGWF STVKKRSLDP LRKTQRENNI SNNTAVRWQQ QHDTQEVVSF ENFPAESSPE ISHDVESTAS TPGTTVGERK HAMAVAIATA AAAEAAVAAA
101: QAAAKVVRLA GYNRQTEEDT AAVLIQSHYR GYLARRALRA LKGLVRLQAL VRGNHVRKQA QMTMKCMQAL VRVQGRVRAR RLQVAHDRFK KQFQEEERRS
201: GMEKPNIGST NLQTEREKPK KLHEVNRTSL YQTPGKEKEK SEGMMKRERA LAYAYTYQRQ MQHTYDDETI GFSVNGLDRT QWGWNWLDHW MSSQPYTGRQ
301: TGPGSSPGPG LYNPPPYPPF PTAAATTAGT TTPDDVSEKT VEMDVTTPTS LKERIIGLTD REYIDVGSYR PAHKQRKSPS HIPSYMIPTA SAKAKVRDQD
401: TTVKIQGTSF MPYWNSSTKN GSINESGCDS SSSGVVSTGY PALRSPIPKM DFRKPVSPSQ SPTGVGKRGW RHDL

Best Arabidopsis Sequence Match ( AT3G49260.1 )
(BLAST)

001: MGKKGSGGWF STVKKKVFKS SPKDSKRENN IGSNNADIWQ QQHDTQEVVS FEHFPAESSP EISHDVESTA STPATNVGDR KHAMAVAIAT AAAAEAAVAA
101: AQAAAKVVRL AGYNRQTEED SAAVLIQSHY RGYLARRALR ALKGLVRLQA LVRGNHVRKQ AQMTMKCMQA LVRVQGRVRA RRLQVAHDRF KKQFEEEEKR
201: SGMEKPNKGF ANLKTEREKP KKLHEVNRTS LYQTQGKEKE RSEGMMKRER ALAYAYTYQR QMQHTNSEEG IGLSSNGPDR NQWAWNWLDH WMSSQPYTGR
301: QTGPGPGPGQ YNPPPYPPFP TAAATTTSDD VSEKTVEMDV TTPTSLKGNI IGLIDREYID LGSYRQGHKQ RKSPTHIPSY MAPTASAKAK VRDQGPTVKL
401: QGTSFMPYWN SSTKNGSVNG SGCDSSSSGG AITTGYPGPR SPNPKSDIRR KPVSPSQSPT GFGKRGWRHD H

Arabidopsis Description

iqd21IQ-domain 21 [Source:UniProtKB/TrEMBL;Acc:F4IWT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.