Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019589.1-P | Field mustard | nucleus | 99.16 | 99.16 |
| CDX86983 | Canola | nucleus | 97.05 | 97.05 |
| CDY05917 | Canola | mitochondrion, nucleus | 84.21 | 84.21 |
| AT3G49260.3 | Thale cress | nucleus | 83.37 | 83.9 |
| CDY05918 | Canola | mitochondrion | 54.95 | 83.12 |
| CDY08120 | Canola | mitochondrion, nucleus | 82.32 | 82.49 |
| VIT_16s0098g01790.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 46.74 | 48.05 |
| KRH53505 | Soybean | cytosol | 45.05 | 47.98 |
| KRH64435 | Soybean | nucleus | 45.05 | 46.22 |
| KRH16503 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 43.58 | 45.2 |
| PGSC0003DMT400023467 | Potato | nucleus | 43.79 | 44.35 |
| Solyc03g083100.2.1 | Tomato | nucleus | 43.79 | 44.35 |
| Solyc06g052010.1.1 | Tomato | cytosol | 34.74 | 41.56 |
| PGSC0003DMT400050471 | Potato | cytosol | 34.53 | 40.29 |
| GSMUA_Achr10P... | Banana | cytosol | 37.05 | 38.94 |
| CDX96427 | Canola | cytosol | 13.68 | 26.75 |
| CDY11238 | Canola | cytosol, plastid | 22.74 | 26.15 |
| CDX77034 | Canola | cytosol | 21.68 | 26.01 |
| CDX92933 | Canola | cytosol, plastid | 21.68 | 25.69 |
| CDY04876 | Canola | nucleus, plastid | 24.0 | 25.62 |
| CDY35313 | Canola | nucleus | 21.26 | 25.44 |
| CDX95328 | Canola | cytosol | 23.79 | 25.39 |
| CDY23202 | Canola | cytosol | 23.79 | 25.39 |
| CDY24286 | Canola | cytosol | 21.47 | 25.25 |
| CDX80849 | Canola | cytosol, plastid | 22.53 | 25.12 |
| CDX72935 | Canola | cytosol | 13.89 | 25.1 |
| CDY37387 | Canola | cytosol | 20.0 | 24.74 |
| CDY27925 | Canola | plastid | 13.47 | 24.15 |
| CDY17214 | Canola | cytosol, plastid | 13.47 | 24.15 |
| CDY10618 | Canola | cytosol | 20.63 | 24.14 |
| CDY10410 | Canola | cytosol, plastid | 22.53 | 24.1 |
| CDY55696 | Canola | nucleus, plastid | 22.11 | 24.03 |
| CDY05931 | Canola | nucleus | 17.26 | 23.3 |
| CDY08131 | Canola | nucleus | 16.84 | 23.26 |
| CDY26241 | Canola | nucleus | 18.32 | 23.2 |
| CDY48305 | Canola | nucleus | 18.32 | 23.2 |
| CDX70333 | Canola | cytosol | 22.53 | 22.29 |
| CDY62768 | Canola | cytosol | 12.84 | 22.02 |
| CDY15200 | Canola | nucleus | 23.58 | 21.92 |
| CDX90011 | Canola | nucleus | 22.95 | 21.46 |
| CDY05111 | Canola | nucleus | 19.37 | 21.45 |
| CDY38525 | Canola | cytosol | 18.32 | 21.07 |
| CDY05984 | Canola | nucleus | 21.68 | 20.81 |
| CDY69140 | Canola | mitochondrion, nucleus | 22.95 | 20.76 |
| CDY39505 | Canola | cytosol | 17.26 | 20.76 |
| CDX71881 | Canola | nucleus | 21.47 | 20.65 |
| CDX91859 | Canola | mitochondrion, nucleus | 22.95 | 20.57 |
| CDY32322 | Canola | cytosol, plastid | 11.16 | 20.46 |
| CDX90766 | Canola | nucleus | 18.53 | 20.42 |
| CDY30433 | Canola | cytosol | 19.16 | 20.22 |
| CDY58749 | Canola | cytosol | 19.37 | 20.18 |
| CDY23391 | Canola | cytosol | 19.58 | 20.17 |
| CDY20099 | Canola | cytosol | 11.16 | 20.08 |
| CDX96426 | Canola | nucleus, plastid | 4.0 | 18.63 |
| CDX72934 | Canola | nucleus, plastid | 4.0 | 18.63 |
| CDX83237 | Canola | cytosol | 19.37 | 18.15 |
| CDX83468 | Canola | plasma membrane | 18.74 | 16.15 |
| CDX92931 | Canola | mitochondrion, nucleus | 8.63 | 16.08 |
| CDX79809 | Canola | nucleus | 20.21 | 16.05 |
| CDY66694 | Canola | nucleus | 19.79 | 15.69 |
| CDY44247 | Canola | nucleus | 18.11 | 15.47 |
| CDY22198 | Canola | cytosol | 17.68 | 15.03 |
| CDY41307 | Canola | cytosol | 17.05 | 14.81 |
| CDX73992 | Canola | nucleus | 14.53 | 14.47 |
| CDY07937 | Canola | nucleus | 14.53 | 14.44 |
| CDY24282 | Canola | mitochondrion | 9.26 | 14.43 |
Protein Annotations
| EnsemblPlants:CDY00196 | EnsemblPlantsGene:GSBRNA2T00109727001 | Gene3D:1.20.5.190 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:DUF4005 | InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | ncoils:Coil | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF33 |
| PFAM:PF00612 | PFAM:PF13178 | PFscan:PS50096 | ProteinID:CDY00196 | ProteinID:CDY00196.1 | SEG:seg |
| SMART:SM00015 | UniParc:UPI0004EED060 | MapMan:35.2 | : | : | : |
Description
BnaA06g20970D
Coordinates
chrLK031917:+:53469..57927
Molecular Weight (calculated)
52778.2 Da
IEP (calculated)
10.436
GRAVY (calculated)
-0.899
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKGNGGWF STVKKKVFKS SPKDSKRENN ISNSDANRWQ QQNDTQEVVS FEKFPEESSP EISHDVESIA STPAPAVGER KHAMAMATED AAKAAVAAAE
101: AAAKVVCLAG YNRLTEEDTA AVLIQSHYRG YLARRALRAL KGLVRLQALV RGNHVRKQAQ MTMKCMQALV RVQGRVRARR LQVAHDRFKK QFEEEESRFM
201: KEKSNKGSAN VQTEREKKKK LHEVNGTSLY QTPGKGKEKT QEMMERERAL AYAYTYQRQM QHTNDGDAIR FSVNGPDRSQ LAWNWLDHWM SSRPYTGRQT
301: VPGSSPGPGQ YNPPPYPPFP TAAATTAGNT TPDDVSEKTV EMDATTPTSL KDRIIGLIDR EYIELGTYRQ AHKQRKSPTR IPSYMAPTAS AKAKVRDQGT
401: TVKLQGTSFI PNWNSSTKQG SINGSGCGSS SSCGEVITGY PGLRSPNPKT DIRRKPVSPS QSPTGYGKRG WRHDH
101: AAAKVVCLAG YNRLTEEDTA AVLIQSHYRG YLARRALRAL KGLVRLQALV RGNHVRKQAQ MTMKCMQALV RVQGRVRARR LQVAHDRFKK QFEEEESRFM
201: KEKSNKGSAN VQTEREKKKK LHEVNGTSLY QTPGKGKEKT QEMMERERAL AYAYTYQRQM QHTNDGDAIR FSVNGPDRSQ LAWNWLDHWM SSRPYTGRQT
301: VPGSSPGPGQ YNPPPYPPFP TAAATTAGNT TPDDVSEKTV EMDATTPTSL KDRIIGLIDR EYIELGTYRQ AHKQRKSPTR IPSYMAPTAS AKAKVRDQGT
401: TVKLQGTSFI PNWNSSTKQG SINGSGCGSS SSCGEVITGY PGLRSPNPKT DIRRKPVSPS QSPTGYGKRG WRHDH
001: MGKKGSGGWF STVKKKVFKS SPKDSKRENN IGSNNADIWQ QQHDTQEVVS FEHFPAESSP EISHDVESTA STPATNVGDR KHAMAVAIAT AAAAEAAVAA
101: AQAAAKVVRL AGYNRQTEED SAAVLIQSHY RGYLARRALR ALKGLVRLQA LVRGNHVRKQ AQMTMKCMQA LVRVQGRVRA RRLQVAHDRF KKQFEEEEKR
201: SGMEKPNKGF ANLKTEREKP KKLHEVNRTS LYQTQGKEKE RSEGMMKRER ALAYAYTYQR QMQHTNSEEG IGLSSNGPDR NQWAWNWLDH WMSSQPYTGR
301: QTGPGPGPGQ YNPPPYPPFP TAAATTTSDD VSEKTVEMDV TTPTSLKGNI IGLIDREYID LGSYRQGHKQ RKSPTHIPSY MAPTASAKAK VRDQGPTVKL
401: QGTSFMPYWN SSTKNGSVNG SGCDSSSSGG AITTGYPGPR SPNPKSDIRR KPVSPSQSPT GFGKRGWRHD H
101: AQAAAKVVRL AGYNRQTEED SAAVLIQSHY RGYLARRALR ALKGLVRLQA LVRGNHVRKQ AQMTMKCMQA LVRVQGRVRA RRLQVAHDRF KKQFEEEEKR
201: SGMEKPNKGF ANLKTEREKP KKLHEVNRTS LYQTQGKEKE RSEGMMKRER ALAYAYTYQR QMQHTNSEEG IGLSSNGPDR NQWAWNWLDH WMSSQPYTGR
301: QTGPGPGPGQ YNPPPYPPFP TAAATTTSDD VSEKTVEMDV TTPTSLKGNI IGLIDREYID LGSYRQGHKQ RKSPTHIPSY MAPTASAKAK VRDQGPTVKL
401: QGTSFMPYWN SSTKNGSVNG SGCDSSSSGG AITTGYPGPR SPNPKSDIRR KPVSPSQSPT GFGKRGWRHD H
Arabidopsis Description
iqd21IQ-domain 21 [Source:UniProtKB/TrEMBL;Acc:F4IWT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.