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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 plasma membrane: 26746009
msms PMID: 26746009 doi
S Chen, Y Luo, G Ding, F Xu
National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY44247 Canola nucleus 93.65 92.81
Bra000318.1-P Field mustard nucleus 95.46 88.4
CDY23391 Canola cytosol 58.08 69.41
CDY30433 Canola cytosol 56.44 69.11
CDX79809 Canola nucleus 71.32 65.72
CDY66694 Canola nucleus 70.42 64.77
AT2G43680.1 Thale cress nucleus 74.23 61.14
CDY05984 Canola nucleus 54.27 60.4
CDX71881 Canola nucleus 53.18 59.31
KRH50198 Soybean cytosol 47.01 48.59
KRH71267 Soybean cytosol 45.92 47.29
Solyc08g014280.2.1 Tomato cytosol 43.19 44.16
PGSC0003DMT400041427 Potato cytosol 42.29 43.55
VIT_05s0094g00530.t01 Wine grape cytosol 47.01 43.31
Solyc06g053450.2.1 Tomato nucleus 39.38 36.66
GSMUA_Achr8P32220_001 Banana cytosol 28.31 35.7
PGSC0003DMT400042121 Potato cytosol, mitochondrion 39.38 35.17
GSMUA_Achr7P02870_001 Banana mitochondrion 18.51 33.89
Os01t0896200-01 Rice mitochondrion 18.51 30.27
EES01898 Sorghum cytosol 30.85 30.2
Zm00001d012167_P001 Maize cytosol 30.49 29.07
CDY11238 Canola cytosol, plastid 20.15 26.88
CDX80849 Canola cytosol, plastid 20.69 26.76
CDY04876 Canola nucleus, plastid 20.87 25.84
HORVU3Hr1G089690.1 Barley cytosol 29.4 25.8
TraesCS3D01G392900.1 Wheat cytosol 29.04 25.72
TraesCS3B01G431200.1 Wheat cytosol 29.22 25.72
CDY23202 Canola cytosol 20.69 25.62
CDX95328 Canola cytosol 20.69 25.62
CDY10410 Canola cytosol, plastid 20.51 25.45
TraesCS3A01G398900.1 Wheat cytosol 28.49 25.2
CDY55696 Canola nucleus, plastid 19.96 25.17
CDX96427 Canola cytosol 10.89 24.69
CDY17214 Canola cytosol, plastid 11.8 24.53
CDY27925 Canola plastid 11.62 24.15
CDX70333 Canola cytosol 20.33 23.33
CDX72935 Canola cytosol 10.89 22.81
CDY38525 Canola cytosol 17.06 22.76
CDY62768 Canola cytosol 11.43 22.74
CDY32322 Canola cytosol, plastid 10.53 22.39
CDX77034 Canola cytosol 15.79 21.97
CDY20099 Canola cytosol 10.53 21.97
CDY35313 Canola nucleus 15.79 21.91
CDY15200 Canola nucleus 18.87 20.35
CDY05111 Canola nucleus 15.79 20.28
CDX90011 Canola nucleus 18.69 20.28
CDX90766 Canola nucleus 15.79 20.19
CDY24286 Canola cytosol 14.7 20.05
CDY10618 Canola cytosol 14.7 19.95
CDX92933 Canola cytosol, plastid 14.52 19.95
CDX83237 Canola cytosol 18.15 19.72
CDY37387 Canola cytosol 13.61 19.53
CDY08131 Canola nucleus 12.16 19.48
CDX86983 Canola nucleus 16.7 19.37
CDY48305 Canola nucleus 13.07 19.2
CDY26241 Canola nucleus 13.07 19.2
CDY05931 Canola nucleus 12.16 19.03
CDY05917 Canola mitochondrion, nucleus 16.15 18.74
CDY00196 Canola nucleus 16.15 18.74
CDX91859 Canola mitochondrion, nucleus 17.97 18.68
CDY69140 Canola mitochondrion, nucleus 17.42 18.29
CDY08120 Canola mitochondrion, nucleus 15.61 18.14
CDX73992 Canola nucleus 15.61 18.03
CDY22198 Canola cytosol 18.15 17.89
CDY41307 Canola cytosol 17.6 17.73
CDY07937 Canola nucleus 15.06 17.36
CDY39505 Canola cytosol 12.16 16.96
CDY58749 Canola cytosol 13.07 15.79
CDX92931 Canola mitochondrion, nucleus 6.53 14.12
CDY05918 Canola mitochondrion 7.99 14.01
CDX96426 Canola nucleus, plastid 2.54 13.73
CDX72934 Canola nucleus, plastid 2.54 13.73
CDY24282 Canola mitochondrion 7.08 12.79
Protein Annotations
EnsemblPlants:CDX83468EnsemblPlantsGene:GSBRNA2T00139046001Gene3D:1.20.5.190GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:DUF4005InterPro:IPR000048InterPro:IQ_motif_EF-hand-BSPANTHER:PTHR32295PANTHER:PTHR32295:SF18PFAM:PF00612
PFAM:PF13178PFscan:PS50096ProteinID:CDX83468ProteinID:CDX83468.1SEG:segSMART:SM00015
UniParc:UPI0004EE0C68MapMan:20.6.2::::
Description
BnaA03g20380D
Coordinates
chrLK031832:-:1658691..1660708
Molecular Weight (calculated)
61316.8 Da
IEP (calculated)
11.279
GRAVY (calculated)
-0.950
Length
551 amino acids
Sequence
(BLAST)
001: MEKKGSWFSK IKRVFTPHPK EKLGSQEAER KSGKEKRKKG FGKLRCGETS SFLPIYREPS SIEKIFGEAE RDHNLVFRPP VLSNPSSPAP PLRPASSEPP
101: PSLPREHLPR SISPEPPDRS KPLSSAASAP PPPASTRVPP PSVLSPKPVP QRVASPQAVS IKPPSPRPTS PGGDSPKALP LNPSPRLETP EPSSPKPPSP
201: REEPPRLNAP RPTTSRSPSP KAVSPKAVQR QESVSRPEPA RSVQHASATK IQATFRGHKA RRSFRALKGL ARLQGVVKGY NVKRQTVTAM KYMQQVVRVQ
301: SQIQSRRIKT LENQAQVEKD DAKWAAFKAG NENWDDSVLT KEERDARSQR KIDAVIKRER YMAYAYSHKL WKNSPKSAQD VQHSGGLSLW WNWGDRQLPL
401: ASHVPNHSQT LRDYMQTPTR LSPSPLSQSS NQQRFRQDNN FDTSTPTSSR SRFLTPSRYS IGRLRGQDSP FKDDDSFASC PPYPRYMAPT VSAKAKVRTN
501: SKPKERVMGT PSVSSVVLEK HKTLKSVGNL SIDTTVSMPA TVGRKPFNRY A
Best Arabidopsis Sequence Match ( AT2G43680.1 )
(BLAST)
001: MVKKGSWFSA IKRVFTPHSK EKLANQEPER KSGKEKKKKG FGKLRHGETN SFLPIFREPS SIEKILGEAE RDHNLVFRPP TPDRPNPYSA SPPPRPASPR
101: VASPRPTSPR VASPRVPSPR AEVPRTLSPK PPSPRAEVPR SLSPKPPSPR ADLPRSLSPK PFDRSKPSSA SANAPPTLRP ASTRVPSQRI TPHSVPSPRP
201: SSPRGASPQA ISSKPPSPRA EPPTLDTPRP PSPRAASLRA DPPRLDAARP TTPRPPSPLA DAPRLDAPRP TTPKPPSPRS DPPRLDAPRP TTPKPPSPRS
301: VSPRAVQRRE IVYRPEPTLP VQHASATKIQ GAFRGYMARK SFRALKGLVR LQGVVRGYSV KRQTINAMKY MQQVVRVQSQ IQSRRIKMLE NQAQVEKDEA
401: KWAASEAGND NWDDSVLTKE ERDSRSQRKT DAIIKRERSM AYAYSRKLWK NSPKSTQDNR SFPQWWNWVD RQNPLASPAP SYSQPQRDFR LTPSRLCPSP
501: LSQSSKQHHI RLDNHFDTST PRSSRSTFHT PSRPIHTGTS RYSRGRLRGQ DSPFKDDDSL TSCPPFPSYM APTVSAKAKV RPNSNPKERV MGTPVSEKRR
601: MSYPPTQDTF RWNKGSLVMS NSSSHRGPGS PGGVVLEKHK TLKSVGNLSI GSTASMATTV GRKEFNRFV
Arabidopsis Description
IQD14IQD14 [Source:UniProtKB/TrEMBL;Acc:A0A178VRE6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.