Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00196 | Canola | nucleus | 97.05 | 97.05 |
| CDY05917 | Canola | mitochondrion, nucleus | 84.42 | 84.42 |
| AT3G49260.3 | Thale cress | nucleus | 83.37 | 83.9 |
| CDY05918 | Canola | mitochondrion | 55.16 | 83.44 |
| CDY08120 | Canola | mitochondrion, nucleus | 82.53 | 82.7 |
| VIT_16s0098g01790.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 47.58 | 48.92 |
| KRH53505 | Soybean | cytosol | 45.68 | 48.65 |
| KRH64435 | Soybean | nucleus | 45.68 | 46.87 |
| KRH16503 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 44.42 | 46.07 |
| Solyc03g083100.2.1 | Tomato | nucleus | 44.21 | 44.78 |
| PGSC0003DMT400023467 | Potato | nucleus | 44.21 | 44.78 |
| Solyc06g052010.1.1 | Tomato | cytosol | 34.32 | 41.06 |
| PGSC0003DMT400050471 | Potato | cytosol | 34.11 | 39.8 |
| GSMUA_Achr10P... | Banana | cytosol | 37.68 | 39.6 |
| CDX96427 | Canola | cytosol | 14.11 | 27.57 |
| CDY11238 | Canola | cytosol, plastid | 23.16 | 26.63 |
| CDX77034 | Canola | cytosol | 22.11 | 26.52 |
| CDY04876 | Canola | nucleus, plastid | 24.63 | 26.29 |
| CDY35313 | Canola | nucleus | 21.68 | 25.94 |
| CDX72935 | Canola | cytosol | 14.32 | 25.86 |
| CDY23202 | Canola | cytosol | 24.21 | 25.84 |
| CDX95328 | Canola | cytosol | 24.21 | 25.84 |
| CDX80849 | Canola | cytosol, plastid | 23.16 | 25.82 |
| CDX92933 | Canola | cytosol, plastid | 21.68 | 25.69 |
| CDY24286 | Canola | cytosol | 21.47 | 25.25 |
| CDY37387 | Canola | cytosol | 20.0 | 24.74 |
| CDY10410 | Canola | cytosol, plastid | 22.95 | 24.55 |
| CDY55696 | Canola | nucleus, plastid | 22.53 | 24.49 |
| CDY27925 | Canola | plastid | 13.47 | 24.15 |
| CDY17214 | Canola | cytosol, plastid | 13.47 | 24.15 |
| CDY10618 | Canola | cytosol | 20.63 | 24.14 |
| CDY05931 | Canola | nucleus | 17.68 | 23.86 |
| CDY08131 | Canola | nucleus | 17.26 | 23.84 |
| CDY48305 | Canola | nucleus | 18.74 | 23.73 |
| CDY26241 | Canola | nucleus | 18.74 | 23.73 |
| CDX70333 | Canola | cytosol | 22.95 | 22.71 |
| CDY62768 | Canola | cytosol | 12.84 | 22.02 |
| CDY15200 | Canola | nucleus | 23.58 | 21.92 |
| CDX90011 | Canola | nucleus | 22.95 | 21.46 |
| CDY38525 | Canola | cytosol | 18.53 | 21.31 |
| CDY39505 | Canola | cytosol | 17.68 | 21.27 |
| CDY05111 | Canola | nucleus | 19.16 | 21.21 |
| CDY05984 | Canola | nucleus | 21.89 | 21.01 |
| CDY69140 | Canola | mitochondrion, nucleus | 22.95 | 20.76 |
| CDY30433 | Canola | cytosol | 19.58 | 20.67 |
| CDX71881 | Canola | nucleus | 21.47 | 20.65 |
| CDY23391 | Canola | cytosol | 20.0 | 20.61 |
| CDX91859 | Canola | mitochondrion, nucleus | 22.95 | 20.57 |
| CDX90766 | Canola | nucleus | 18.32 | 20.19 |
| CDY58749 | Canola | cytosol | 19.37 | 20.18 |
| CDY32322 | Canola | cytosol, plastid | 10.95 | 20.08 |
| CDY20099 | Canola | cytosol | 10.95 | 19.7 |
| CDX83237 | Canola | cytosol | 19.58 | 18.34 |
| CDX92931 | Canola | mitochondrion, nucleus | 9.05 | 16.86 |
| CDX83468 | Canola | plasma membrane | 19.37 | 16.7 |
| CDX96426 | Canola | nucleus, plastid | 3.58 | 16.67 |
| CDX72934 | Canola | nucleus, plastid | 3.58 | 16.67 |
| CDX79809 | Canola | nucleus | 20.63 | 16.39 |
| CDY66694 | Canola | nucleus | 20.21 | 16.03 |
| CDY44247 | Canola | nucleus | 18.74 | 16.01 |
| CDY22198 | Canola | cytosol | 17.89 | 15.21 |
| CDY41307 | Canola | cytosol | 17.26 | 14.99 |
| CDY24282 | Canola | mitochondrion | 9.47 | 14.75 |
| CDX73992 | Canola | nucleus | 14.74 | 14.68 |
| CDY07937 | Canola | nucleus | 14.74 | 14.64 |
Protein Annotations
| EnsemblPlants:CDX86983 | EnsemblPlantsGene:GSBRNA2T00145817001 | Gene3D:1.20.5.190 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:DUF4005 | InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | ncoils:Coil | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF33 |
| PFAM:PF00612 | PFAM:PF13178 | PFscan:PS50096 | ProteinID:CDX86983 | ProteinID:CDX86983.1 | SEG:seg |
| SMART:SM00015 | UniParc:UPI0004EEEC07 | MapMan:35.2 | : | : | : |
Description
BnaC03g52530D
Coordinates
chrLK031848:-:1117584..1122258
Molecular Weight (calculated)
52862.3 Da
IEP (calculated)
10.544
GRAVY (calculated)
-0.896
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKGNGGWF STVKKKVFKS SPKDSKRENN ISNSDANRWQ QQNDTQEVVS FEKFPEESSP EISHDVESIA STPATAIGER KHAMAMATAD AAKAAVAAAE
101: AAAKVVRLAG YNRLTEEDTA AVLIQSQYRG YLARRALRAL KGLVRLQALV RGYHVRKQAQ MTMKCMQALV RVQGRVRARR LQVAHDRFKK QFEEEESRFM
201: MEKSNKGSAN VQTEREKKKK LHDVNRTSLY QTPGKGKEKT QGMMERERAL AYAYTYQRQM QHTNDGDAIR FSVNGPDRSQ LAWNWLDHWM SSRPYTGRQT
301: VPGSSPGPGQ YNPPPYPPFP TAATTTAGNT TPDDVSEKTV EMDATTPTSL KDRIIGLIDR EYIDLGTYRQ AHKQRKSPNR IPSYMAPTAS ANAKVRDQGT
401: TVKLQGTSFI PNWNSSTKQG SINGSGCGSS SSCGEVITGY PGLRSPNPKT DIRRKPVSPS QSPTGYGKRG WRHDH
101: AAAKVVRLAG YNRLTEEDTA AVLIQSQYRG YLARRALRAL KGLVRLQALV RGYHVRKQAQ MTMKCMQALV RVQGRVRARR LQVAHDRFKK QFEEEESRFM
201: MEKSNKGSAN VQTEREKKKK LHDVNRTSLY QTPGKGKEKT QGMMERERAL AYAYTYQRQM QHTNDGDAIR FSVNGPDRSQ LAWNWLDHWM SSRPYTGRQT
301: VPGSSPGPGQ YNPPPYPPFP TAATTTAGNT TPDDVSEKTV EMDATTPTSL KDRIIGLIDR EYIDLGTYRQ AHKQRKSPNR IPSYMAPTAS ANAKVRDQGT
401: TVKLQGTSFI PNWNSSTKQG SINGSGCGSS SSCGEVITGY PGLRSPNPKT DIRRKPVSPS QSPTGYGKRG WRHDH
001: MGKKGSGGWF STVKKKVFKS SPKDSKRENN IGSNNADIWQ QQHDTQEVVS FEHFPAESSP EISHDVESTA STPATNVGDR KHAMAVAIAT AAAAEAAVAA
101: AQAAAKVVRL AGYNRQTEED SAAVLIQSHY RGYLARRALR ALKGLVRLQA LVRGNHVRKQ AQMTMKCMQA LVRVQGRVRA RRLQVAHDRF KKQFEEEEKR
201: SGMEKPNKGF ANLKTEREKP KKLHEVNRTS LYQTQGKEKE RSEGMMKRER ALAYAYTYQR QMQHTNSEEG IGLSSNGPDR NQWAWNWLDH WMSSQPYTGR
301: QTGPGPGPGQ YNPPPYPPFP TAAATTTSDD VSEKTVEMDV TTPTSLKGNI IGLIDREYID LGSYRQGHKQ RKSPTHIPSY MAPTASAKAK VRDQGPTVKL
401: QGTSFMPYWN SSTKNGSVNG SGCDSSSSGG AITTGYPGPR SPNPKSDIRR KPVSPSQSPT GFGKRGWRHD H
101: AQAAAKVVRL AGYNRQTEED SAAVLIQSHY RGYLARRALR ALKGLVRLQA LVRGNHVRKQ AQMTMKCMQA LVRVQGRVRA RRLQVAHDRF KKQFEEEEKR
201: SGMEKPNKGF ANLKTEREKP KKLHEVNRTS LYQTQGKEKE RSEGMMKRER ALAYAYTYQR QMQHTNSEEG IGLSSNGPDR NQWAWNWLDH WMSSQPYTGR
301: QTGPGPGPGQ YNPPPYPPFP TAAATTTSDD VSEKTVEMDV TTPTSLKGNI IGLIDREYID LGSYRQGHKQ RKSPTHIPSY MAPTASAKAK VRDQGPTVKL
401: QGTSFMPYWN SSTKNGSVNG SGCDSSSSGG AITTGYPGPR SPNPKSDIRR KPVSPSQSPT GFGKRGWRHD H
Arabidopsis Description
iqd21IQ-domain 21 [Source:UniProtKB/TrEMBL;Acc:F4IWT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.