CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034294.1-P	Field mustard	nucleus	98.99	98.99
CDX77034	Canola	cytosol	96.98	97.22
AT2G26180.1	Thale cress	cytosol	85.64	81.73
Solyc08g062940.2.1	Tomato	cytosol	48.36	62.14
VIT_04s0008g01080.t01	Wine grape	nucleus	67.76	59.91
PGSC0003DMT400021183	Potato	cytosol	60.2	55.07
KRH15576	Soybean	cytosol	56.68	53.96
KRH61522	Soybean	cytosol	60.96	53.78
KRH05433	Soybean	cytosol	55.67	53.51
KRH52206	Soybean	cytosol	59.7	52.67
CDX96427	Canola	cytosol	30.73	50.21
GSMUA_Achr6P04930_001	Banana	cytosol	49.37	48.28
Os01t0194200-01	Rice	cytosol	53.4	47.96
TraesCS3B01G124000.1	Wheat	cytosol	52.39	47.93
CDX72935	Canola	cytosol	31.74	47.91
TraesCS3D01G107700.1	Wheat	cytosol	52.39	47.82
OQU86150	Sorghum	cytosol	53.15	47.52
GSMUA_Achr2P16650_001	Banana	nucleus	50.13	46.93
TraesCS3A01G105600.1	Wheat	cytosol, nucleus, peroxisome	51.64	46.8
Zm00001d039471_P001	Maize	cytosol	52.39	46.22
GSMUA_Achr7P09640_001	Banana	endoplasmic reticulum	46.1	44.42
GSMUA_Achr10P...	Banana	cytosol	46.6	43.74
HORVU3Hr1G019240.2	Barley	mitochondrion, peroxisome	51.64	41.41
GSMUA_Achr2P15730_001	Banana	cytosol	44.08	39.68
CDY48305	Canola	nucleus	37.03	39.2
CDY26241	Canola	nucleus	37.03	39.2
CDY27925	Canola	plastid	22.92	34.34
CDY17214	Canola	cytosol, plastid	22.67	33.96
CDY37387	Canola	cytosol	32.75	33.85
CDY24286	Canola	cytosol	33.25	32.67
CDY10618	Canola	cytosol	33.25	32.51
CDX92933	Canola	cytosol, plastid	32.75	32.42
CDY32322	Canola	cytosol, plastid	20.91	32.05
CDY20099	Canola	cytosol	20.91	31.44
CDY62768	Canola	cytosol	21.91	31.41
CDY58749	Canola	cytosol	34.26	29.82
CDY39505	Canola	cytosol	29.22	29.37
CDX92931	Canola	mitochondrion, nucleus	16.88	26.27
CDY11238	Canola	cytosol, plastid	27.2	26.15
CDX80849	Canola	cytosol, plastid	27.96	26.06
CDY04876	Canola	nucleus, plastid	28.46	25.39
CDY08131	Canola	nucleus	21.91	25.29
CDY55696	Canola	nucleus, plastid	27.71	25.17
CDY23202	Canola	cytosol	27.71	24.72
CDX95328	Canola	cytosol	27.71	24.72
CDY05931	Canola	nucleus	21.91	24.72
CDY10410	Canola	cytosol, plastid	27.46	24.55
CDX72934	Canola	nucleus, plastid	6.05	23.53
CDX96426	Canola	nucleus, plastid	6.05	23.53
CDY05111	Canola	nucleus	25.19	23.31
CDX90766	Canola	nucleus	25.19	23.2
CDX70333	Canola	cytosol	27.46	22.71
CDY05917	Canola	mitochondrion, nucleus	26.7	22.32
CDY15200	Canola	nucleus	28.72	22.31
CDY08120	Canola	mitochondrion, nucleus	26.45	22.15
CDX90011	Canola	nucleus	28.21	22.05
CDX86983	Canola	nucleus	25.94	21.68
CDY69140	Canola	mitochondrion, nucleus	28.21	21.33
CDY38525	Canola	cytosol	22.17	21.31
CDY00196	Canola	nucleus	25.44	21.26
CDX91859	Canola	mitochondrion, nucleus	28.21	21.13
CDY24282	Canola	mitochondrion	15.62	20.33
CDY30433	Canola	cytosol	21.66	19.11
CDY05918	Canola	mitochondrion	14.86	18.79
CDY23391	Canola	cytosol	21.41	18.44
CDX83237	Canola	cytosol	23.43	18.34
CDX71881	Canola	nucleus	22.67	18.22
CDY05984	Canola	nucleus	21.91	17.58
CDY07937	Canola	nucleus	20.91	17.36
CDX73992	Canola	nucleus	20.4	16.98
CDY22198	Canola	cytosol	23.43	16.64
CDY41307	Canola	cytosol	21.91	15.9
CDX83468	Canola	plasma membrane	21.91	15.79
CDY44247	Canola	nucleus	21.41	15.29
CDX79809	Canola	nucleus	21.66	14.38
CDY66694	Canola	nucleus	20.91	13.86

Protein Annotations

EnsemblPlants:CDY35313	EnsemblPlantsGene:GSBRNA2T00058279001	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF86	PFAM:PF00612	PFscan:PS50096
ProteinID:CDY35313	ProteinID:CDY35313.1	SEG:seg	SMART:SM00015	UniParc:UPI0004EF0738	UniProt:A0A078HEU0
MapMan:35.1	:	:	:	:	:

Description

BnaA04g15340DBnaA04g15340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HEU0]

Coordinates

chrLK032350:+:26494..28298

Molecular Weight (calculated)

44581.3 Da

IEP (calculated)

11.437

GRAVY (calculated)

-0.735

Length

397 amino acids

Sequence
(BLAST)

001: MGASGKWVKS IMGLKKPEKN ESEKGSSGKN KKWKLWRSPS GDLASPWKGI RHGRSDSVSY SAAVATVLRA PPKDFKAVRE EWAAIRIQTA FRGFLARRAL
101: RALKGIVRLQ ALVRGRQVRK QAAVTLRCMQ ALVRVQARVR ARRVRMTVQG QAVQKLLDEH RSKSDLLKEV EEGWCDRKGT VDDIKTKLQQ RQDGAFKRER
201: ALAYALAQKQ WRSIPSSNLK TNSSISYLKS QEFDKNSWGW SWLERWMAAR PWETRLMDAT DAATPPTKHL KSPEVVKVRR NNVTTRVSAK PPPHMSSSSS
301: GYDFNVSPGS TTPASVTTGL VSDNSSKNKP SYMSMTESTK AKRRTNHVMR QSMDEFQFMN NSGLFTGDLK SSSPVSSDPP SYVTNFSKPF GVSTRRG

Best Arabidopsis Sequence Match ( AT2G26180.1 )
(BLAST)

001: MGASGKWVKS IIGLKKLEKD EIEKGNGKNK KWKLWRTTSV DSWKGFRGKH RSDSDGVDSS TVYSAAVATV LRAPPKDFKA VREEWAAIRI QTAFRGFLAR
101: RALRALKGIV RLQALVRGRQ VRKQAAVTLR CMQALVRVQA RVRARRVRMT VEGQAVQKLL DEHRTKSDLL KEVEEGWCDR KGTVDDIKSK LQQRQEGAFK
201: RERALAYALA QKQWRSTTSS NLKTNSSISY LKSQEFDKNS WGWSWLERWM AARPWETRLM DTVDTAATPP PLPHKHLKSP ETADVVQVRR NNVTTRVSAK
301: PPPHMLSSSP GYEFNESSGS SSICTSTTPV SGKTGLVSDN SSSQAKKHKP SYMSLTESTK AKRRTNRGLR QSMDEFQFMK NSGMFTGELK TSPSSDPFVS
401: FSKPLGVPTR FEKPRG

Arabidopsis Description

IQD6At2g26180 [Source:UniProtKB/TrEMBL;Acc:O64852]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.