Factsheet for VIT_04s0008g01080.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g062940.2.1	Tomato	cytosol	50.33	73.14
PGSC0003DMT400021183	Potato	cytosol	69.71	72.12
KRH61522	Soybean	cytosol	71.94	71.78
KRH05433	Soybean	cytosol	64.14	69.73
KRH52206	Soybean	cytosol	69.49	69.33
AT2G26180.1	Thale cress	cytosol	64.14	69.23
KRH15576	Soybean	cytosol	63.7	68.59
Bra034294.1-P	Field mustard	nucleus	60.13	68.01
CDY35313	Canola	nucleus	59.91	67.76
CDX77034	Canola	cytosol	59.47	67.42
GSMUA_Achr6P04930_001	Banana	cytosol	53.23	58.87
TraesCS3B01G124000.1	Wheat	cytosol	55.68	57.6
TraesCS3D01G107700.1	Wheat	cytosol	55.68	57.47
GSMUA_Achr2P16650_001	Banana	nucleus	54.12	57.31
Os01t0194200-01	Rice	cytosol	56.35	57.24
TraesCS3A01G105600.1	Wheat	cytosol, nucleus, peroxisome	55.68	57.08
OQU86150	Sorghum	cytosol	56.35	56.98
Zm00001d039471_P001	Maize	cytosol	56.12	56.0
GSMUA_Achr10P...	Banana	cytosol	52.12	55.32
GSMUA_Achr7P09640_001	Banana	endoplasmic reticulum	50.11	54.61
GSMUA_Achr2P15730_001	Banana	cytosol	49.22	50.11
HORVU3Hr1G019240.2	Barley	mitochondrion, peroxisome	55.01	49.9
VIT_06s0009g00210.t01	Wine grape	cytosol	36.08	36.4
VIT_10s0003g00860.t01	Wine grape	cytosol, plastid	22.49	33.01
VIT_19s0014g01690.t01	Wine grape	cytosol	21.16	30.74
VIT_13s0019g03890.t01	Wine grape	cytosol	31.4	29.25
VIT_08s0040g02360.t01	Wine grape	nucleus	28.73	26.93
VIT_16s0098g01790.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	27.62	26.84
VIT_16s0098g01070.t01	Wine grape	mitochondrion, nucleus	25.17	24.46
VIT_15s0048g02680.t01	Wine grape	nucleus	29.4	23.7
VIT_02s0025g02690.t01	Wine grape	mitochondrion, nucleus	27.39	23.03
VIT_05s0094g00530.t01	Wine grape	cytosol	22.72	17.06

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:100254187	wikigene:100254187	MapMan:35.2	ProteinID:CCB46558	ProteinID:CCB46558.1
InterPro:DUF4005	UniProt:F6H3M5	EMBL:FN595231	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	EntrezGene:LOC100254187	wikigene:LOC100254187	PFAM:PF00612	PFAM:PF13178
PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF86	SMART:SM00015	UniParc:UPI0001982E31	ArrayExpress:VIT_04s0008g01080
EnsemblPlantsGene:VIT_04s0008g01080	EnsemblPlants:VIT_04s0008g01080.t01	RefSeq:XP_002279054	RefSeq:XP_002279054.1	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:912051..914696

Molecular Weight (calculated)

50310.6 Da

IEP (calculated)

10.861

GRAVY (calculated)

-0.765

Length

449 amino acids

Sequence
(BLAST)

001: MGGSGKWVKA LIGLKKPEKD DHEKVGGKSK KWRLWRSSSG EMGSSWRGFK GGHRAYSEGS DSSSVGTDAF TAAVATVVRA PPKDFRVVRQ EWAAIRIQTA
101: FRGFLARRAL RALKGVVRLQ ALVRGRQVRK QAAVTLRCMQ ALVRVQARVR ARRVRMSMEG QAVQKLLDER RSQADLLKEA EEGWCDSKGT LADVKTKLQM
201: RQEGAFKRER AIAYSLAQKQ WRSSQNANSQ TNVSVSSVKN HELDKSSWGW SWLERWMAAK PWENRLMEQA HTDPSETTPP FKHCMNPLSG THSKSSEPGS
301: VKVRRNNVTT RISAKPPPIG LVTRSSSSPS SEFQYDESSA SSSICTSATP VSGNTVLTSD KTEDSSNYRP SYMNLTESTK AKQRSHRVQR QSMDEFQFLK
401: KSGLYCNVDT KSSAGSDPPS VNFSKPLYLP TRMDKASVKV RERENCFYE

Best Arabidopsis Sequence Match ( AT2G26180.1 )
(BLAST)

001: MGASGKWVKS IIGLKKLEKD EIEKGNGKNK KWKLWRTTSV DSWKGFRGKH RSDSDGVDSS TVYSAAVATV LRAPPKDFKA VREEWAAIRI QTAFRGFLAR
101: RALRALKGIV RLQALVRGRQ VRKQAAVTLR CMQALVRVQA RVRARRVRMT VEGQAVQKLL DEHRTKSDLL KEVEEGWCDR KGTVDDIKSK LQQRQEGAFK
201: RERALAYALA QKQWRSTTSS NLKTNSSISY LKSQEFDKNS WGWSWLERWM AARPWETRLM DTVDTAATPP PLPHKHLKSP ETADVVQVRR NNVTTRVSAK
301: PPPHMLSSSP GYEFNESSGS SSICTSTTPV SGKTGLVSDN SSSQAKKHKP SYMSLTESTK AKRRTNRGLR QSMDEFQFMK NSGMFTGELK TSPSSDPFVS
401: FSKPLGVPTR FEKPRG

Arabidopsis Description

IQD6At2g26180 [Source:UniProtKB/TrEMBL;Acc:O64852]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.