Factsheet for VIT_15s0048g02680.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47821	Soybean	nucleus	73.79	75.27
KRH06386	Soybean	mitochondrion, nucleus	73.43	74.36
PGSC0003DMT400029325	Potato	mitochondrion	40.04	67.17
Solyc10g005000.2.1	Tomato	nucleus	47.22	66.75
VIT_02s0025g02690.t01	Wine grape	mitochondrion, nucleus	61.94	64.61
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	52.96	63.99
GSMUA_Achr1P18950_001	Banana	nucleus	51.89	63.1
CDY15200	Canola	nucleus	56.01	61.06
AT4G00820.1	Thale cress	mitochondrion, nucleus	58.17	60.67
CDX90011	Canola	nucleus	55.12	60.43
VIT_16s0098g01070.t01	Wine grape	mitochondrion, nucleus	49.55	59.74
GSMUA_Achr1P16160_001	Banana	nucleus	47.76	59.38
Bra033284.1-P	Field mustard	nucleus	55.66	58.94
CDY69140	Canola	mitochondrion, nucleus	55.12	58.48
TraesCSU01G104800.3	Wheat	nucleus	56.91	58.17
CDX91859	Canola	mitochondrion, nucleus	55.3	58.11
HORVU7Hr1G075720.1	Barley	plasma membrane	56.91	58.06
Bra000930.1-P	Field mustard	mitochondrion, nucleus	54.58	57.9
TraesCS7A01G317400.2	Wheat	nucleus	56.55	57.9
AT1G01110.2	Thale cress	nucleus	54.76	57.87
Os08t0115200-01	Rice	cytosol	56.19	57.64
TraesCS7B01G218800.3	Wheat	nucleus	56.19	57.43
GSMUA_Achr6P02050_001	Banana	cytosol	15.98	57.42
Zm00001d049684_P002	Maize	cytosol, mitochondrion	52.42	53.68
EES14418	Sorghum	cytosol	54.4	52.79
VIT_13s0019g03890.t01	Wine grape	cytosol	30.88	35.68
VIT_16s0098g01790.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	26.57	32.03
VIT_08s0040g02360.t01	Wine grape	nucleus	27.11	31.52
VIT_04s0008g01080.t01	Wine grape	nucleus	23.7	29.4
VIT_06s0009g00210.t01	Wine grape	cytosol	22.98	28.76
VIT_10s0003g00860.t01	Wine grape	cytosol, plastid	14.9	27.12
VIT_19s0014g01690.t01	Wine grape	cytosol	13.64	24.6
VIT_05s0094g00530.t01	Wine grape	cytosol	25.13	23.41

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:100264217	wikigene:100264217	MapMan:35.2	ProteinID:CBI38703	ProteinID:CBI38703.3
UniProt:D7U821	InterPro:DUF4005	EMBL:FN596739	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	EntrezGene:LOC100264217	wikigene:LOC100264217	PFAM:PF00612	PFAM:PF13178
PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF50	SMART:SM00015	UniParc:UPI0001984DD1	ArrayExpress:VIT_15s0048g02680
EnsemblPlantsGene:VIT_15s0048g02680	EnsemblPlants:VIT_15s0048g02680.t01	unigene:Vvi.23980	RefSeq:XP_002265121	RefSeq:XP_002265121.1	SEG:seg

Description

No Description!

Coordinates

chr15:+:16814247..16816927

Molecular Weight (calculated)

61640.0 Da

IEP (calculated)

10.821

GRAVY (calculated)

-0.942

Length

557 amino acids

Sequence
(BLAST)

001: MGKKGGSSWL TAVKRAFRSP TKETDKRSGR RREEHDQEED EEKKREKRRW IFRKPTNQET ASPQTQSKVA ASFSAGGGGG VAPVNDDVSA SAAAEQRHAI
101: AMAVATAAAA EAAVATAQAA VEVARLTRPS NHYAKENYAA IVIQTAFRGY LAKRALRALK GLVKLQALVR GHNVRKQAKM TLRCMQALVR VQARVLDQRL
201: RLSHEGSRKS TFSDTNSLWE SRYLQDIAER KSISREGSSI ADDWDERPHT IEEVKAMLQT RKEAALKREK NLSQALSQQI WRTGRSPSMG NEDELEEKPK
301: WLDRWMATKP WESRGRASTD QRDPIKTVEI DTSQPYSYLA PNFRRSNQNQ YQPNQFQRPN SHSVASPLHR AHQNVSHHQS PITPSPSKTR PLQVRSASPR
401: CGREDRSLHT SQTPSLRSNY YYNGGLHQQG RGATTSGGGS GGPALPNYMA ATESTKARVR SQSAPRQRPS TPERERGGPG SVSGSARKRL SFPAPDPYSG
501: GIGYGGYGHN LRSPSFKSVG GGYLGLEQQS NYSSCCTDSL GGEISPSSTS DLRRWMR

Best Arabidopsis Sequence Match ( AT4G00820.1 )
(BLAST)

001: MGKKSGSSSS WLTAVKRAFR SPTKKEHNNN AHGNEVDEDE DKKKEKRRWL FRKSTNHDSP VKTSGVGKDA PAQKSTETTT IINPTVLSSV TEQRYDASTP
101: PATVSAASET HPPSTTKELP NLTRRTYTAR EDYAAVVIQT GFRGYLARRA LRALKGLVKL QALVRGHNVR KQAKMTLRCM QALVRVQSRV LDQRKRLSHD
201: GSRKSAFSDT QSVLESRYLQ EISDRRSMSR EGSSIAEDWD DRPHTIEEVK AMLQQRRDNA LRRESNNSIS QAFSHQVRRT RGSYSTGDEY EEERPKWLDR
301: WMASKPWDKR ASTDQRVPPV YKTVEIDTSQ PYLTRGNSRT GASPSRSQRP SSPSRTSHHY QQHNFSSATP SPAKSRPIQI RSASPRIQRD DRSAYNYTSN
401: TPSLRSNYSF TARSGYSVCT TTTTATNAAL PNYMAITESA KARIRSQSAP RQRPSTPEKE RISSARKRLS FPVPPLPQQM DGQSLRSPSF KSIGGSQLGA
501: LEQQSNYSSC CTESLGGGGE ISPASTSDYR RWLR

Arabidopsis Description

iqd17IQ-domain 17 [Source:UniProtKB/TrEMBL;Acc:F4JHN2]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.