CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06386	Soybean	mitochondrion, nucleus	96.52	95.82
VIT_15s0048g02680.t01	Wine grape	nucleus	75.27	73.79
PGSC0003DMT400029325	Potato	mitochondrion	41.58	68.37
Solyc10g005000.2.1	Tomato	nucleus	49.27	68.27
CDY15200	Canola	nucleus	57.14	61.06
CDX90011	Canola	nucleus	56.78	61.02
Bra033284.1-P	Field mustard	nucleus	56.96	59.13
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	49.82	59.0
GSMUA_Achr1P18950_001	Banana	nucleus	49.45	58.95
AT4G00820.1	Thale cress	mitochondrion, nucleus	57.51	58.8
AT1G01110.2	Thale cress	nucleus	56.41	58.44
CDY69140	Canola	mitochondrion, nucleus	55.68	57.9
CDX91859	Canola	mitochondrion, nucleus	55.86	57.55
Bra000930.1-P	Field mustard	mitochondrion, nucleus	55.31	57.52
GSMUA_Achr1P16160_001	Banana	nucleus	45.97	56.03
Os08t0115200-01	Rice	cytosol	55.49	55.8
HORVU7Hr1G075720.1	Barley	plasma membrane	55.31	55.31
TraesCS7B01G218800.3	Wheat	nucleus	55.13	55.23
TraesCSU01G104800.3	Wheat	nucleus	55.13	55.23
TraesCS7A01G317400.2	Wheat	nucleus	54.95	55.15
GSMUA_Achr6P02050_001	Banana	cytosol	15.2	53.55
Zm00001d049684_P002	Maize	cytosol, mitochondrion	51.65	51.84
EES14418	Sorghum	cytosol	54.4	51.74
KRH53505	Soybean	cytosol	26.37	32.29
KRH64435	Soybean	nucleus	26.92	31.75
KRH57858	Soybean	cytosol	26.01	31.28
KRH16503	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	25.46	30.35
KRH04761	Soybean	cytosol	26.74	30.23
KRG95941	Soybean	nucleus	26.37	30.19
KRH19825	Soybean	cytosol	25.09	29.15
KRH67648	Soybean	nucleus	25.46	29.14
KRH26707	Soybean	cytosol	22.34	28.91
KRH32420	Soybean	cytosol	25.09	28.9
KRH32840	Soybean	mitochondrion, nucleus	6.96	28.79
KRH22612	Soybean	cytosol	22.34	28.71
KRH39086	Soybean	cytosol	22.34	28.11
KRH61522	Soybean	cytosol	23.08	28.0
KRH15576	Soybean	cytosol	20.7	27.1
KRH52206	Soybean	cytosol	22.16	26.89
KRH05433	Soybean	cytosol	20.33	26.88
KRH20344	Soybean	cytosol	14.47	26.6
KRH50151	Soybean	cytosol	14.1	26.55
KRG91856	Soybean	cytosol	23.63	26.38
KRH34906	Soybean	cytosol	22.71	25.67
KRH44124	Soybean	mitochondrion	19.78	25.65
KRH27315	Soybean	cytosol	13.55	25.17
KRH21320	Soybean	cytosol	13.74	25.08
KRH10977	Soybean	cytosol	13.74	24.35
KRH55128	Soybean	mitochondrion, nucleus	13.0	23.99
KRH10035	Soybean	cytosol	18.13	23.8
KRH47099	Soybean	cytosol	19.96	23.64
KRH23285	Soybean	nucleus	17.77	23.54
KRH50198	Soybean	cytosol	22.53	23.08
KRH71267	Soybean	cytosol	22.53	22.99
KRH37691	Soybean	mitochondrion	7.51	22.65
KRH22000	Soybean	plastid	13.55	21.57

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:100786729	MapMan:35.2	EMBL:ACUP02004170	InterPro:DUF4005	EnsemblPlantsGene:GLYMA_07G050800
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1KHQ6	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS
ProteinID:KRH47820.1	EnsemblPlants:KRH47821	ProteinID:KRH47821	ProteinID:KRH47821.1	PFAM:PF00612	PFAM:PF13178
PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF50	SMART:SM00015	UniParc:UPI000233868A	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:4384271..4388779

Molecular Weight (calculated)

61194.3 Da

IEP (calculated)

10.846

GRAVY (calculated)

-1.011

Length

546 amino acids

Sequence
(BLAST)

001: MGKKGSGSSW LTAVKRAFRS PTKDSDKRSG RRREDCDQEE DEEKKREKRR WIFRKTHMSH EGGNNNNNTQ QKLKHDVAAS GGGSRTDQDQ KHAVAVAVAT
101: AEAAMATAQA AVEVARLSKP ASHAREHYAA VVIQTAFRGY LARRALRALK GLVKLQALVR GHNVRKQAKM TLRCMQALVR VQARVLDQRI RSSLEGSRKS
201: TFSDTASVWD SRYLQDISDR KSISREGSSI TDDWDERHHT VEEVKAMLMQ RKEAAAMKRD KTLSQAFSQQ IWRNGRTSSI GNEDELEERP KWLDRWMATK
301: PWENRGRAST DQRDHIKTVE IDTSQPYSYL GTNYRRSHPN YQYNPNHHQP QRHSIASPLH RSHQNGSSLH QSPATPSPAK SRPIQVRSAS PRCIRDDRSY
401: HTSQTPSLRS NYHYAGNLYQ NGRVVGTGTS NGGATATLPN YMAATESAKA RIRSQSAPRQ RPSTPERDRV GSAKKRLSFP APDPYGVGVS YGNYGHSLRS
501: PSFKSVSGSH FGGLEQQSNY SSCCTESIGG GQVSPSSTGD LRRWLR

Best Arabidopsis Sequence Match ( AT4G00820.1 )
(BLAST)

001: MGKKSGSSSS WLTAVKRAFR SPTKKEHNNN AHGNEVDEDE DKKKEKRRWL FRKSTNHDSP VKTSGVGKDA PAQKSTETTT IINPTVLSSV TEQRYDASTP
101: PATVSAASET HPPSTTKELP NLTRRTYTAR EDYAAVVIQT GFRGYLARRA LRALKGLVKL QALVRGHNVR KQAKMTLRCM QALVRVQSRV LDQRKRLSHD
201: GSRKSAFSDT QSVLESRYLQ EISDRRSMSR EGSSIAEDWD DRPHTIEEVK AMLQQRRDNA LRRESNNSIS QAFSHQVRRT RGSYSTGDEY EEERPKWLDR
301: WMASKPWDKR ASTDQRVPPV YKTVEIDTSQ PYLTRGNSRT GASPSRSQRP SSPSRTSHHY QQHNFSSATP SPAKSRPIQI RSASPRIQRD DRSAYNYTSN
401: TPSLRSNYSF TARSGYSVCT TTTTATNAAL PNYMAITESA KARIRSQSAP RQRPSTPEKE RISSARKRLS FPVPPLPQQM DGQSLRSPSF KSIGGSQLGA
501: LEQQSNYSSC CTESLGGGGE ISPASTSDYR RWLR

Arabidopsis Description

iqd17IQ-domain 17 [Source:UniProtKB/TrEMBL;Acc:F4JHN2]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.