Factsheet for Bra033284.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90011	Canola	nucleus	95.63	99.02
CDY15200	Canola	nucleus	95.06	97.85
AT1G01110.2	Thale cress	nucleus	83.65	83.49
Bra000930.1-P	Field mustard	mitochondrion, nucleus	67.3	67.43
Solyc10g005000.2.1	Tomato	nucleus	45.06	60.15
PGSC0003DMT400029325	Potato	mitochondrion	36.88	58.43
KRH47821	Soybean	nucleus	59.13	56.96
KRH06386	Soybean	mitochondrion, nucleus	58.56	56.0
VIT_15s0048g02680.t01	Wine grape	nucleus	58.94	55.66
GSMUA_Achr1P18950_001	Banana	nucleus	44.68	51.31
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	44.87	51.19
GSMUA_Achr1P16160_001	Banana	nucleus	43.35	50.89
TraesCS7B01G218800.3	Wheat	nucleus	50.76	48.99
HORVU7Hr1G075720.1	Barley	plasma membrane	50.57	48.72
TraesCS7A01G317400.2	Wheat	nucleus	50.38	48.71
TraesCSU01G104800.3	Wheat	nucleus	50.38	48.62
Os08t0115200-01	Rice	cytosol	50.19	48.62
GSMUA_Achr6P02050_001	Banana	cytosol	13.88	47.1
EES14418	Sorghum	cytosol	49.81	45.64
Zm00001d049684_P002	Maize	cytosol, mitochondrion	46.2	44.67
Bra000717.1-P	Field mustard	nucleus	35.74	43.52
Bra017988.1-P	Field mustard	nucleus	22.43	33.71
Bra031331.1-P	Field mustard	cytosol	21.29	29.17
Bra001855.1-P	Field mustard	cytosol	19.01	29.15
Bra033443.1-P	Field mustard	cytosol	24.33	28.76
Bra034294.1-P	Field mustard	nucleus	21.1	27.96
Bra028854.1-P	Field mustard	nucleus, plastid	23.38	27.64
Bra005462.1-P	Field mustard	cytosol, plastid	13.5	26.79
Bra009554.1-P	Field mustard	cytosol	21.86	24.42
Bra007471.1-P	Field mustard	nucleus	22.62	23.99
Bra021588.1-P	Field mustard	cytosol, plastid	11.79	23.48
Bra019589.1-P	Field mustard	nucleus	20.91	23.16
Bra016042.1-P	Field mustard	cytosol	18.06	23.06
Bra023846.1-P	Field mustard	cytosol	18.25	23.02
Bra021888.1-P	Field mustard	plastid	11.22	22.78
Bra017997.1-P	Field mustard	nucleus, plastid	20.53	22.74
Bra025971.1-P	Field mustard	nucleus	15.02	21.07
Bra034081.1-P	Field mustard	nucleus	17.68	20.95
Bra037689.1-P	Field mustard	cytosol	20.53	20.49
Bra000318.1-P	Field mustard	nucleus	21.29	18.82
Bra001299.1-P	Field mustard	nucleus	16.16	17.97
Bra004776.1-P	Field mustard	nucleus	21.1	17.76

Protein Annotations

EnsemblPlants:Bra033284.1	EnsemblPlants:Bra033284.1-P	EnsemblPlantsGene:Bra033284	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF50
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	SEG:seg	SMART:SM00015	UniParc:UPI0002545144
UniProt:M4EWU9	MapMan:35.2	:	:	:	:

Description

AT1G01110 (E=3e-211) IQD18 | IQD18 (IQ-domain 18)

Coordinates

chrA10:+:4497094..4499320

Molecular Weight (calculated)

59254.2 Da

IEP (calculated)

10.853

GRAVY (calculated)

-1.031

Length

526 amino acids

Sequence
(BLAST)

001: MGKKNGSSWL SAVKRAFRSP SKKERNDPHG KEIEEDEEKK REKRRWLFKK PATQDSPVKP SGVSPPPPPQ ESDNANSKTL PETAPTTPPN VGKSPSVTTS
101: ASPVAVPNVT RRIYYARENY AAVVIQTSFR GYLARRALRA LKGLVKLQAL VRGHNVRKQA KMTLRCMQAL VRVQSRVLDQ RKRLSHDGSR KSAFSDSTHC
201: GFESRYLQDI SDRQSMSREG SSVPEDWDDR PHTIDEVKAM LQRRRDTALR HEKTNLSQAF SQQTWRTSGS QSAGRDHKAE LEEERPKWLD RWMATRPWDK
301: PPISRASVDQ RVSVKTVEID TSQPYSRART GSPSRSQRPS SPSRSSHHYQ PRSNFSATPS PAKSRPINIR SASPRCQKDP RDDYDRAAYS YTSNTPSLRS
401: NYSFTARSGC SVSTTMVNNA AMLPNYMANT ESAKARIRSQ SAPRQRPSTP ERDRVGLVKK RLSFPVPPQP EYDDINSLRS PSFKSVAGSH FGALLEQQSN
501: YSSCCTESNG VEVSPASTSD YRNWLR

Best Arabidopsis Sequence Match ( AT1G01110.2 )
(BLAST)

001: MGKKNGSSSW LTAVKRAFRS PTKKDHSNDV EEDEEKKREK RRWFRKPATQ ESPVKSSGIS PPAPQEDSLN VNSKPSPETA PSYATTTPPS NAGKPPSAVV
101: PIATSASKTL APRRIYYARE NYAAVVIQTS FRGYLARRAL RALKGLVKLQ ALVRGHNVRK QAKMTLRCMQ ALVRVQSRVL DQRKRLSHDG SRKSAFSDSH
201: AVFESRYLQD LSDRQSMSRE GSSAAEDWDD RPHTIDAVKV MLQRRRDTAL RHDKTNLSQA FSQKMWRTVG NQSTEGHHEV ELEEERPKWL DRWMATRPWD
301: KRASSRASVD QRVSVKTVEI DTSQPYSRTG AGSPSRGQRP SSPSRTSHHY QSRNNFSATP SPAKSRPILI RSASPRCQRD PREDRDRAAY SYTSNTPSLR
401: SNYSFTARSG CSISTTMVNN ASLLPNYMAS TESAKARIRS HSAPRQRPST PERDRAGLVK KRLSYPVPPP AEYEDNNSLR SPSFKSVAGS HFGGMLEQQS
501: NYSSCCTESN GVEISPASTS DFRNWLR

Arabidopsis Description

IQD18IQ-domain 18 [Source:UniProtKB/TrEMBL;Acc:Q9MAM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.