Factsheet for Bra028854.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025315.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03040.1	Bra025315.1-P	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04876	Canola	nucleus, plastid	98.65	98.65
CDY55696	Canola	nucleus, plastid	93.03	94.74
AT5G03040.1	Thale cress	cytosol, plastid	86.97	83.95
Bra009554.1-P	Field mustard	cytosol	81.57	77.07
Bra034081.1-P	Field mustard	nucleus	53.71	53.83
KRG95941	Soybean	nucleus	53.71	50.1
KRH67648	Soybean	nucleus	52.13	48.64
KRH19825	Soybean	cytosol	50.79	48.09
KRH32420	Soybean	cytosol	51.01	47.89
Bra001299.1-P	Field mustard	nucleus	50.34	47.36
VIT_08s0040g02360.t01	Wine grape	nucleus	50.79	47.18
Solyc10g084280.1.1	Tomato	nucleus	50.34	46.86
Solyc10g086060.1.1	Tomato	cytosol	49.21	46.5
GSMUA_Achr10P...	Banana	nucleus	46.97	46.44
PGSC0003DMT400027139	Potato	cytosol	50.11	46.36
PGSC0003DMT400045333	Potato	cytosol	48.76	46.07
PGSC0003DMT400004433	Potato	cytosol	49.66	46.04
Solyc09g007410.2.1	Tomato	cytosol	49.21	45.34
GSMUA_Achr3P17820_001	Banana	cytosol	48.54	45.19
KXG21175	Sorghum	cytosol	47.42	44.61
Zm00001d035492_P009	Maize	cytosol	47.64	44.54
Os05t0123200-01	Rice	plasma membrane	47.42	44.51
Zm00001d010975_P003	Maize	cytosol	46.97	43.72
TraesCS1A01G064100.1	Wheat	cytosol	46.74	43.33
TraesCS1D01G064700.1	Wheat	cytosol	46.52	43.31
HORVU1Hr1G013210.1	Barley	cytosol	46.97	43.18
TraesCS1B01G082100.1	Wheat	cytosol	46.29	42.92
Bra033443.1-P	Field mustard	cytosol	42.47	42.47
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	43.6	42.27
GSMUA_Achr7P18240_001	Banana	cytosol	43.37	40.89
GSMUA_Achr7P22680_001	Banana	cytosol	42.47	40.65
GSMUA_Achr10P...	Banana	cytosol	37.3	39.34
TraesCS3D01G543500.1	Wheat	cytosol	43.82	39.31
TraesCS3B01G603500.1	Wheat	cytosol, mitochondrion	43.6	36.88
Os01t0833800-01	Rice	plasma membrane	41.12	36.6
HORVU3Hr1G087500.2	Barley	cytosol	40.9	36.47
TraesCS3A01G352500.1	Wheat	cytosol	40.9	36.47
TraesCS3B01G385100.1	Wheat	cytosol	40.9	36.47
TraesCS3D01G346500.1	Wheat	cytosol	40.9	36.47
KXG33651	Sorghum	cytosol	40.67	36.35
TraesCS3A01G538100.1	Wheat	cytosol, mitochondrion	43.15	36.16
GSMUA_Achr11P...	Banana	mitochondrion	37.53	36.15
Zm00001d042973_P007	Maize	cytosol	40.22	35.31
HORVU3Hr1G117830.2	Barley	endoplasmic reticulum, extracellular	44.04	33.56
Bra005462.1-P	Field mustard	cytosol, plastid	19.55	32.83
Bra031331.1-P	Field mustard	cytosol	25.62	29.69
Bra034294.1-P	Field mustard	nucleus	25.39	28.46
Bra021888.1-P	Field mustard	plastid	16.4	28.19
Os05t0463300-00	Rice	plasma membrane	31.01	27.49
HORVU1Hr1G071700.1	Barley	nucleus	31.01	26.85
TraesCS1D01G287100.2	Wheat	cytosol	31.91	26.84
TraesCS1A01G288100.2	Wheat	nucleus	31.01	26.49
TraesCS1B01G297500.1	Wheat	cytosol	31.01	26.14
Bra001855.1-P	Field mustard	cytosol	19.78	25.66
Bra007471.1-P	Field mustard	nucleus	28.31	25.4
Bra021588.1-P	Field mustard	cytosol, plastid	15.06	25.38
OQU78148	Sorghum	cytosol	31.46	25.0
Bra017997.1-P	Field mustard	nucleus, plastid	26.52	24.84
Bra019589.1-P	Field mustard	nucleus	26.07	24.42
Bra025971.1-P	Field mustard	nucleus	20.22	24.0
Bra016042.1-P	Field mustard	cytosol	21.8	23.54
Bra033284.1-P	Field mustard	nucleus	27.64	23.38
Bra017988.1-P	Field mustard	nucleus	17.98	22.86
Bra023846.1-P	Field mustard	cytosol	21.12	22.54
Bra000717.1-P	Field mustard	nucleus	21.12	21.76
Bra037689.1-P	Field mustard	cytosol	25.39	21.44
Bra000930.1-P	Field mustard	mitochondrion, nucleus	25.17	21.33
Zm00001d038395_P005	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	30.56	20.92
Bra000318.1-P	Field mustard	nucleus	27.87	20.84
Bra004776.1-P	Field mustard	nucleus	28.31	20.16

Protein Annotations

EnsemblPlants:Bra028854.1	EnsemblPlants:Bra028854.1-P	EnsemblPlantsGene:Bra028854	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF28	PFAM:PF00612	PFscan:PS50096
SEG:seg	SMART:SM00015	UniParc:UPI00025436A7	UniProt:M4EJ88	MapMan:35.1	:

Description

AT5G03040 (E=7e-186) iqd2 | iqd2 (IQ-domain 2); calmodulin binding

Coordinates

chrA02:-:1736255..1737991

Molecular Weight (calculated)

48567.2 Da

IEP (calculated)

11.248

GRAVY (calculated)

-0.859

Length

445 amino acids

Sequence
(BLAST)

001: MGKKAKWFSS VKKAFSPDSK KSKRKSPESP NGVISNPPDQ ARQSSPPAPP PLEVRVAEVI VERNINLSPP STDAVNATTS DIHVAPSSSA PPEVVVRPRA
101: AAPTRFAGKS NEEAAAILIQ TVFRGYLAKR ALRAMRGLVR LRLLMEGSVV KRQAANTLKC MQTLSRVQSQ IRARRIRMSE ENQARQKQLL QKHAKELAGL
201: KNGDNWDDSI QSKEKVEAKL LSKYEATMRR ERALAYAYTH QQNWKNNSKS GNPMFMDPSN PTCGWSWLER WMAGRPLDNS SEQNNDNAAS KPITRNNSTQ
301: PNTPSSARAG GGTPRNKNSF FSPPTPSRLN QSSRKSNDDD AKSTISVLSE RTRRHSIAGS SVRDDESLAG SQTLPSYMVP TKSARARVNK PQSPSSGGTT
401: QENDGFTAKK RLSYPASPAL PKPRRFSAPP KVEGGGVTVT NGGGS

Best Arabidopsis Sequence Match ( AT5G03040.2 )
(BLAST)

001: MGKKAKWFSS VKKAFSPDSK KSKQKLAEGQ NGVISNPPVV DNVRQSSSSP PPALAPREVR VAEVIVERNR DLSPPSTADA VNVTATDVPV VPSSSAPGVV
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S

Arabidopsis Description

iqd2At5g03040/F15A17_70 [Source:UniProtKB/TrEMBL;Acc:Q93ZH7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.