CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05647
EES09373
EES16732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03040.1	EES05647	AT3G27960.1	21798944
AT5G03040.1	EES09373	AT4G09570.1	19130088
AT5G03040.1	EES16732	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038395_P005	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	74.29	64.0
TraesCS1D01G287100.2	Wheat	cytosol	43.93	46.5
Os05t0463300-00	Rice	plasma membrane	41.61	46.41
TraesCS1B01G297500.1	Wheat	cytosol	43.39	46.02
TraesCS1A01G288100.2	Wheat	nucleus	42.68	45.87
HORVU1Hr1G071700.1	Barley	nucleus	41.61	45.33
KXG33651	Sorghum	cytosol	34.64	38.96
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	29.46	35.95
GSMUA_Achr7P22680_001	Banana	cytosol	29.82	35.91
VIT_08s0040g02360.t01	Wine grape	nucleus	30.71	35.91
GSMUA_Achr10P...	Banana	cytosol	26.43	35.07
KRH19825	Soybean	cytosol	29.29	34.89
PGSC0003DMT400004433	Potato	cytosol	29.64	34.58
KRH32420	Soybean	cytosol	28.93	34.18
CDX80849	Canola	cytosol, plastid	25.89	34.04
KRH67648	Soybean	nucleus	28.93	33.96
Solyc09g007410.2.1	Tomato	cytosol	29.29	33.95
CDY11238	Canola	cytosol, plastid	25.0	33.9
Solyc10g084280.1.1	Tomato	nucleus	28.93	33.89
KRG95941	Soybean	nucleus	28.75	33.75
PGSC0003DMT400027139	Potato	cytosol	28.57	33.26
PGSC0003DMT400045333	Potato	cytosol	27.68	32.91
GSMUA_Achr11P...	Banana	mitochondrion	26.79	32.47
CDY10410	Canola	cytosol, plastid	25.54	32.21
CDY04876	Canola	nucleus, plastid	25.54	32.13
AT5G03040.1	Thale cress	cytosol, plastid	26.43	32.1
Solyc10g086060.1.1	Tomato	cytosol	26.96	32.06
CDY55696	Canola	nucleus, plastid	24.82	31.81
Bra028854.1-P	Field mustard	nucleus, plastid	25.0	31.46
KXG21175	Sorghum	cytosol	26.25	31.08
CDX70333	Canola	cytosol	25.36	29.58
Bra009554.1-P	Field mustard	cytosol	24.64	29.3
AT3G09710.2	Thale cress	nucleus	24.46	29.27
Bra034081.1-P	Field mustard	nucleus	21.96	27.7
Bra001299.1-P	Field mustard	nucleus	21.07	24.95
CDX73992	Canola	nucleus	20.89	24.53
CDY07937	Canola	nucleus	20.71	24.27
EER87873	Sorghum	nucleus	13.93	23.42
CDY22198	Canola	cytosol	22.68	22.72
CDY41307	Canola	cytosol	22.14	22.67
EES03502	Sorghum	mitochondrion	16.61	21.28
OQU86150	Sorghum	cytosol	16.79	21.17
KXG24027	Sorghum	cytosol	15.89	20.23
EES14418	Sorghum	cytosol	19.82	19.34
EER91163	Sorghum	cytosol	14.46	19.19
EER90769	Sorghum	mitochondrion	15.0	19.09
EES01898	Sorghum	cytosol	18.04	17.94
KXG22437	Sorghum	mitochondrion, plastid	16.61	17.03

Protein Annotations

EnsemblPlants:OQU78148	EnsemblPlantsGene:SORBI_3009G166000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048
InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF6	PFAM:PF00612	PFscan:PS50096	ProteinID:OQU78148
ProteinID:OQU78148.1	ProteinID:OQU78149.1	SEG:seg	UniParc:UPI000B8BAF87	UniProt:A0A1Z5R2Y8	MapMan:35.1

Description

hypothetical protein

Coordinates

chr9:-:52230306..52233230

Molecular Weight (calculated)

61373.8 Da

IEP (calculated)

10.902

GRAVY (calculated)

-0.732

Length

560 amino acids

Sequence
(BLAST)

001: MGRKARWFDT VQRILSISEP DPVETHTDAK AAKLRDKPSF KKIWQFGKSN PSGASTSAAP ALDVEAHQPH QLPQSPAPNN KQHFEETTTE VQFMDSRCEE
101: EGECIMHQTE VVSPASKVHS TSTTMAVVAI ACPTVISPTK WCARSKEDIA ATRIQAACRG HLARKPPQER AMARLMSLVD KGFAVKRQTQ EALYCMQMMT
201: RIQTQIYSRR LKTEEDKKAL KSQPKVKQSP DKTKTGDGWD HSLQSKEQME AVLKMKQEAA TRRQRALSYA FSQQWRNRNT SSARAVHAPA PMFMDPGNPN
301: WGWSWTERWM AAARPWENQT TTLSDTGRVA SKSASSRLPR VAVSVQIPAM TTTTPKGKSL RPPNWSSSLL LSSPSTPPPR SSPLISGRPS KLASPRSGPL
401: HATSGLQHTK SLQPDRRPRS SQELSVNSPR RAVPASPRAA SGGSSPLHTS SGATTMQFEP STMGDDEGSP VTPSYMHPTK SVRAKKVRCP SPSAAMATSD
501: MFDAPESGPA PLQVPPSPSS AKKRLPQVFA DKPSASSPSK VALERVRRYS QLSSPRMSLS

Best Arabidopsis Sequence Match ( AT5G03040.1 )
(BLAST)

001: MGKKAKWFSS VKKAFSPDSK KSKQKLAEGQ NGVISNPPVV DNVRQSSSSP PPALAPREVR VAEVIVERNR DLSPPSTADA VNVTATDVPV VPSSSAPGVV
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S

Arabidopsis Description

iqd2At5g03040/F15A17_70 [Source:UniProtKB/TrEMBL;Acc:Q93ZH7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.