Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_14s0066g01280.t01 | |
| VIT_18s0072g01030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G03040.1 | VIT_14s0066g01280.t01 | AT3G27960.1 | 21798944 |
| AT5G03040.1 | VIT_18s0072g01030.t01 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0019g03890.t01 | Wine grape | cytosol | 68.68 | 68.26 |
| KRG95941 | Soybean | nucleus | 64.93 | 65.2 |
| KRH67648 | Soybean | nucleus | 63.88 | 64.15 |
| PGSC0003DMT400004433 | Potato | cytosol | 63.05 | 62.92 |
| PGSC0003DMT400045333 | Potato | cytosol | 60.75 | 61.78 |
| Solyc09g007410.2.1 | Tomato | cytosol | 62.0 | 61.49 |
| KRH32420 | Soybean | cytosol | 60.75 | 61.39 |
| Solyc10g086060.1.1 | Tomato | cytosol | 60.33 | 61.36 |
| PGSC0003DMT400027139 | Potato | cytosol | 61.59 | 61.33 |
| Solyc10g084280.1.1 | Tomato | nucleus | 61.17 | 61.3 |
| KRH19825 | Soybean | cytosol | 60.13 | 61.28 |
| GSMUA_Achr3P17820_001 | Banana | cytosol | 58.25 | 58.37 |
| GSMUA_Achr10P... | Banana | nucleus | 54.7 | 58.22 |
| Os05t0123200-01 | Rice | plasma membrane | 55.32 | 55.91 |
| TraesCS1A01G064100.1 | Wheat | cytosol | 55.95 | 55.83 |
| TraesCS1B01G082100.1 | Wheat | cytosol | 55.95 | 55.83 |
| TraesCS1D01G064700.1 | Wheat | cytosol | 55.53 | 55.65 |
| HORVU1Hr1G013210.1 | Barley | cytosol | 56.16 | 55.58 |
| KXG21175 | Sorghum | cytosol | 53.86 | 54.55 |
| CDY11238 | Canola | cytosol, plastid | 46.76 | 54.24 |
| Zm00001d035492_P009 | Maize | cytosol | 53.03 | 53.36 |
| CDX80849 | Canola | cytosol, plastid | 47.39 | 53.29 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 50.94 | 53.16 |
| GSMUA_Achr7P22680_001 | Banana | cytosol | 51.15 | 52.69 |
| Zm00001d010975_P003 | Maize | cytosol | 52.4 | 52.51 |
| CDY04876 | Canola | nucleus, plastid | 47.6 | 51.24 |
| AT5G03040.1 | Thale cress | cytosol, plastid | 49.06 | 50.98 |
| Bra028854.1-P | Field mustard | nucleus, plastid | 47.18 | 50.79 |
| CDY10410 | Canola | cytosol, plastid | 46.76 | 50.45 |
| CDY55696 | Canola | nucleus, plastid | 45.93 | 50.34 |
| GSMUA_Achr7P18240_001 | Banana | cytosol | 49.48 | 50.21 |
| GSMUA_Achr10P... | Banana | cytosol | 43.84 | 49.76 |
| Os01t0833800-01 | Rice | plasma membrane | 50.52 | 48.4 |
| KXG33651 | Sorghum | cytosol | 49.48 | 47.59 |
| TraesCS3D01G543500.1 | Wheat | cytosol | 49.27 | 47.58 |
| HORVU3Hr1G087500.2 | Barley | cytosol | 49.48 | 47.49 |
| TraesCS3A01G352500.1 | Wheat | cytosol | 49.48 | 47.49 |
| TraesCS3D01G346500.1 | Wheat | cytosol | 49.27 | 47.29 |
| TraesCS3B01G385100.1 | Wheat | cytosol | 49.27 | 47.29 |
| Bra009554.1-P | Field mustard | cytosol | 46.35 | 47.13 |
| CDX70333 | Canola | cytosol | 46.97 | 46.88 |
| Zm00001d042973_P007 | Maize | cytosol | 49.06 | 46.35 |
| GSMUA_Achr11P... | Banana | mitochondrion | 44.68 | 46.32 |
| AT3G09710.2 | Thale cress | nucleus | 44.47 | 45.51 |
| TraesCS3B01G603500.1 | Wheat | cytosol, mitochondrion | 49.69 | 45.25 |
| TraesCS3A01G538100.1 | Wheat | cytosol, mitochondrion | 49.27 | 44.44 |
| Bra034081.1-P | Field mustard | nucleus | 40.71 | 43.92 |
| HORVU3Hr1G117830.2 | Barley | endoplasmic reticulum, extracellular | 49.69 | 40.75 |
| Bra001299.1-P | Field mustard | nucleus | 39.04 | 39.53 |
| CDX73992 | Canola | nucleus | 38.41 | 38.57 |
| CDY07937 | Canola | nucleus | 38.0 | 38.08 |
| CDY41307 | Canola | cytosol | 40.5 | 35.47 |
| CDY22198 | Canola | cytosol | 41.34 | 35.42 |
| VIT_10s0003g00860.t01 | Wine grape | cytosol, plastid | 21.92 | 34.31 |
| TraesCS1D01G287100.2 | Wheat | cytosol | 36.53 | 33.08 |
| HORVU1Hr1G071700.1 | Barley | nucleus | 35.49 | 33.07 |
| TraesCS1A01G288100.2 | Wheat | nucleus | 35.7 | 32.82 |
| VIT_19s0014g01690.t01 | Wine grape | cytosol | 20.46 | 31.72 |
| TraesCS1B01G297500.1 | Wheat | cytosol | 34.66 | 31.44 |
| Os05t0463300-00 | Rice | plasma membrane | 32.78 | 31.27 |
| OQU78148 | Sorghum | cytosol | 35.91 | 30.71 |
| VIT_16s0098g01070.t01 | Wine grape | mitochondrion, nucleus | 27.97 | 29.0 |
| VIT_06s0009g00210.t01 | Wine grape | cytosol | 26.72 | 28.76 |
| VIT_04s0008g01080.t01 | Wine grape | nucleus | 26.93 | 28.73 |
| VIT_16s0098g01790.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 27.14 | 28.14 |
| VIT_05s0094g00530.t01 | Wine grape | cytosol | 35.07 | 28.09 |
| VIT_02s0025g02690.t01 | Wine grape | mitochondrion, nucleus | 31.32 | 28.09 |
| VIT_15s0048g02680.t01 | Wine grape | nucleus | 31.52 | 27.11 |
| Zm00001d038395_P005 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 33.61 | 24.77 |
Protein Annotations
| EntrezGene:100255106 | wikigene:100255106 | MapMan:35.1 | ProteinID:CCB57045 | ProteinID:CCB57045.1 | ncoils:Coil |
| InterPro:DUF4005 | UniProt:F6HQZ6 | EMBL:FN596008 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | EntrezGene:LOC100255106 | wikigene:LOC100255106 | PFAM:PF00612 | PFAM:PF13178 |
| PFscan:PS50096 | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF28 | SMART:SM00015 | TIGR:TC64828 | UniParc:UPI0001983D09 |
| ArrayExpress:VIT_08s0040g02360 | EnsemblPlantsGene:VIT_08s0040g02360 | EnsemblPlants:VIT_08s0040g02360.t01 | unigene:Vvi.653 | RefSeq:XP_002279479 | RefSeq:XP_002279479.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr8:+:13435573..13441057
Molecular Weight (calculated)
52674.1 Da
IEP (calculated)
10.640
GRAVY (calculated)
-0.815
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKGNWLSS VKKALSPEPK EKKDQRADKS KKKWFGKHKY PDPNPSSLET VPGPSLAPPE EVKTIEPDNE HHKHVYSVAA TTTMASLDVP ETDVEVVEIT
101: TLTQSTGKAK EEAAAIKIQT AFRGYLARRA LRALRGLVRL QSLIQGTAVK RQAANTLRCM QTLARVQSQI CYRRIRMSEE NQALQRQLLQ KQAKEFEQLK
201: MGEEWDDSLQ SKEQIEAGLL NKQGAAMRRE RALAYAFSHQ QAWKNSSKST NLLFMDPSNP HWGWSWLERW MAARPWESRS TTDKELNNDQ LSIKSGSRSI
301: TGGEITKAYA RHLLDSSKPS PTASQKPYHP PARQSPSTPP SKAVSSSSAA GKFKPAASPR GNLWGQDDDT KSMVSIQSER FRRHSIAGSS VGDDESLASS
401: PAVPSYMAPT KSAKAKSRLQ SPLGLENNGT PEKGSSGIAK KRLSFPASPA RPRRHSGPPR VESSSLTEGI VSNGGGTVS
101: TLTQSTGKAK EEAAAIKIQT AFRGYLARRA LRALRGLVRL QSLIQGTAVK RQAANTLRCM QTLARVQSQI CYRRIRMSEE NQALQRQLLQ KQAKEFEQLK
201: MGEEWDDSLQ SKEQIEAGLL NKQGAAMRRE RALAYAFSHQ QAWKNSSKST NLLFMDPSNP HWGWSWLERW MAARPWESRS TTDKELNNDQ LSIKSGSRSI
301: TGGEITKAYA RHLLDSSKPS PTASQKPYHP PARQSPSTPP SKAVSSSSAA GKFKPAASPR GNLWGQDDDT KSMVSIQSER FRRHSIAGSS VGDDESLASS
401: PAVPSYMAPT KSAKAKSRLQ SPLGLENNGT PEKGSSGIAK KRLSFPASPA RPRRHSGPPR VESSSLTEGI VSNGGGTVS
001: MGKKAKWFSS VKKAFSPDSK KSKQKLAEGQ NGVISNPPVV DNVRQSSSSP PPALAPREVR VAEVIVERNR DLSPPSTADA VNVTATDVPV VPSSSAPGVV
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S
Arabidopsis Description
iqd2At5g03040/F15A17_70 [Source:UniProtKB/TrEMBL;Acc:Q93ZH7]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.