Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400001405 | |
| PGSC0003DMT400002331 | |
| PGSC0003DMT400067082 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G03040.1 | PGSC0003DMT400001405 | AT3G27960.1 | 21798944 |
| AT5G03040.1 | PGSC0003DMT400002331 | AT4G09570.1 | 19130088 |
| AT5G03040.1 | PGSC0003DMT400067082 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g084280.1.1 | Tomato | nucleus | 97.92 | 98.54 |
| PGSC0003DMT400004433 | Potato | cytosol | 80.46 | 80.62 |
| PGSC0003DMT400045333 | Potato | cytosol | 73.8 | 75.37 |
| VIT_08s0040g02360.t01 | Wine grape | nucleus | 61.33 | 61.59 |
| KRG95941 | Soybean | nucleus | 59.88 | 60.38 |
| PGSC0003DMT400010610 | Potato | nucleus | 57.59 | 60.22 |
| KRH67648 | Soybean | nucleus | 58.84 | 59.33 |
| KRH19825 | Soybean | cytosol | 56.55 | 57.87 |
| KRH32420 | Soybean | cytosol | 56.55 | 57.38 |
| GSMUA_Achr3P17820_001 | Banana | cytosol | 54.68 | 55.02 |
| GSMUA_Achr10P... | Banana | nucleus | 51.35 | 54.89 |
| CDY11238 | Canola | cytosol, plastid | 46.36 | 54.0 |
| Os05t0123200-01 | Rice | plasma membrane | 52.6 | 53.38 |
| GSMUA_Achr7P22680_001 | Banana | cytosol | 51.35 | 53.12 |
| TraesCS1D01G064700.1 | Wheat | cytosol | 52.39 | 52.72 |
| CDX80849 | Canola | cytosol, plastid | 46.36 | 52.35 |
| TraesCS1A01G064100.1 | Wheat | cytosol | 52.18 | 52.29 |
| HORVU1Hr1G013210.1 | Barley | cytosol | 52.6 | 52.27 |
| KXG21175 | Sorghum | cytosol | 50.94 | 51.8 |
| TraesCS1B01G082100.1 | Wheat | cytosol | 51.56 | 51.67 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 49.27 | 51.63 |
| Zm00001d035492_P009 | Maize | cytosol | 50.94 | 51.47 |
| Zm00001d010975_P003 | Maize | cytosol | 50.94 | 51.26 |
| AT5G03040.1 | Thale cress | cytosol, plastid | 48.65 | 50.76 |
| CDY04876 | Canola | nucleus, plastid | 46.57 | 50.34 |
| CDY10410 | Canola | cytosol, plastid | 46.36 | 50.23 |
| Bra028854.1-P | Field mustard | nucleus, plastid | 46.36 | 50.11 |
| CDY55696 | Canola | nucleus, plastid | 45.32 | 49.89 |
| HORVU3Hr1G087500.2 | Barley | cytosol | 50.31 | 48.5 |
| TraesCS3D01G346500.1 | Wheat | cytosol | 50.31 | 48.5 |
| TraesCS3B01G385100.1 | Wheat | cytosol | 50.31 | 48.5 |
| TraesCS3A01G352500.1 | Wheat | cytosol | 50.31 | 48.5 |
| GSMUA_Achr10P... | Banana | cytosol | 42.2 | 48.1 |
| Os01t0833800-01 | Rice | plasma membrane | 49.9 | 48.0 |
| KXG33651 | Sorghum | cytosol | 49.69 | 47.99 |
| Zm00001d042973_P007 | Maize | cytosol | 49.69 | 47.14 |
| GSMUA_Achr11P... | Banana | mitochondrion | 44.28 | 46.1 |
| Bra009554.1-P | Field mustard | cytosol | 45.11 | 46.07 |
| CDX70333 | Canola | cytosol | 45.95 | 46.04 |
| GSMUA_Achr7P18240_001 | Banana | cytosol | 44.91 | 45.76 |
| TraesCS3D01G543500.1 | Wheat | cytosol | 46.99 | 45.56 |
| TraesCS3B01G603500.1 | Wheat | cytosol, mitochondrion | 46.78 | 42.78 |
| TraesCS3A01G538100.1 | Wheat | cytosol, mitochondrion | 46.99 | 42.56 |
| AT3G09710.2 | Thale cress | nucleus | 41.16 | 42.31 |
| Bra034081.1-P | Field mustard | nucleus | 36.38 | 39.41 |
| HORVU3Hr1G117830.2 | Barley | endoplasmic reticulum, extracellular | 46.78 | 38.53 |
| Bra001299.1-P | Field mustard | nucleus | 35.14 | 35.73 |
| CDX73992 | Canola | nucleus | 34.3 | 34.59 |
| CDY07937 | Canola | nucleus | 33.47 | 33.68 |
| CDY22198 | Canola | cytosol | 38.05 | 32.74 |
| CDY41307 | Canola | cytosol | 36.8 | 32.36 |
| TraesCS1D01G287100.2 | Wheat | cytosol | 35.14 | 31.95 |
| HORVU1Hr1G071700.1 | Barley | nucleus | 33.68 | 31.52 |
| Os05t0463300-00 | Rice | plasma membrane | 32.43 | 31.08 |
| TraesCS1A01G288100.2 | Wheat | nucleus | 33.47 | 30.9 |
| TraesCS1B01G297500.1 | Wheat | cytosol | 33.26 | 30.3 |
| PGSC0003DMT400023467 | Potato | nucleus | 29.31 | 30.06 |
| PGSC0003DMT400068456 | Potato | cytosol | 18.5 | 29.28 |
| PGSC0003DMT400021183 | Potato | cytosol | 26.4 | 29.26 |
| PGSC0003DMT400039646 | Potato | mitochondrion | 17.88 | 29.05 |
| PGSC0003DMT400041427 | Potato | cytosol | 31.81 | 28.6 |
| OQU78148 | Sorghum | cytosol | 33.26 | 28.57 |
| PGSC0003DMT400050471 | Potato | cytosol | 23.91 | 28.26 |
| PGSC0003DMT400031576 | Potato | nucleus | 27.03 | 26.21 |
| PGSC0003DMT400059119 | Potato | cytosol | 16.42 | 25.65 |
| PGSC0003DMT400006376 | Potato | cytosol | 21.62 | 24.36 |
| Zm00001d038395_P005 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 31.81 | 23.54 |
| PGSC0003DMT400038175 | Potato | cytosol | 23.91 | 22.24 |
| PGSC0003DMT400042121 | Potato | cytosol, mitochondrion | 28.27 | 22.04 |
| PGSC0003DMT400029325 | Potato | mitochondrion | 14.55 | 21.08 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400027139 | EnsemblPlantsGene:PGSC0003DMG400010468 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000048 |
| InterPro:IQ_motif_EF-hand-BS | ncoils:Coil | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF28 | PFAM:PF00612 | PFscan:PS50096 |
| PGSC:PGSC0003DMG400010468 | SEG:seg | SMART:SM00015 | UniParc:UPI0002968E2C | UniProt:M1AP91 | MapMan:35.1 |
Description
Calmodulin binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010468]
Coordinates
chr10:-:54808526..54812888
Molecular Weight (calculated)
53053.8 Da
IEP (calculated)
10.932
GRAVY (calculated)
-0.786
Length
481 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKGSWFSS VKKALSPNSK EKSDKKDGKS KKKWFGKEKQ PLPDSSTLVV ASVSPPQPVP PVEEVKLAEV EEEQTKHVYS VAVATAAAAE AAVAAAQAAA
101: EVVRLTTVNQ FPGKSKEEIA AIRIQTTFRG YLARRALRAL RGLVRLKTLV DGPTVKRQTA NTLKCMQTLS RAQSQISSRR SRLLEENRTL QRQLMQKHAK
201: ELESLRRGEE WNDTLQSKEQ IEASLLGRYE AAMRRERALA YSYSHQQTWK KSSKVTNLLF MDPTNPQWGW SWLERWMGAR SRENQNMSEK ELKSDQMSVR
301: SASMSMAGGE ITKAFARHQL NSELPSSPLS QKPNRPSSRQ SPTTPSKPST ARKPKPGSAR VSAINQEDDT RSVFSVQSEM NRRHSIAGSS VRDDESLGSC
401: SSVPSYMAST QSAKARTTRL QSPLGVENGT PPAKGSAGSV KKRLSYSPSP AITRRHSGPP KVEITSTNTS NADKYVNGVV N
101: EVVRLTTVNQ FPGKSKEEIA AIRIQTTFRG YLARRALRAL RGLVRLKTLV DGPTVKRQTA NTLKCMQTLS RAQSQISSRR SRLLEENRTL QRQLMQKHAK
201: ELESLRRGEE WNDTLQSKEQ IEASLLGRYE AAMRRERALA YSYSHQQTWK KSSKVTNLLF MDPTNPQWGW SWLERWMGAR SRENQNMSEK ELKSDQMSVR
301: SASMSMAGGE ITKAFARHQL NSELPSSPLS QKPNRPSSRQ SPTTPSKPST ARKPKPGSAR VSAINQEDDT RSVFSVQSEM NRRHSIAGSS VRDDESLGSC
401: SSVPSYMAST QSAKARTTRL QSPLGVENGT PPAKGSAGSV KKRLSYSPSP AITRRHSGPP KVEITSTNTS NADKYVNGVV N
001: MGKSWFSAVK KALSPEPKQK KEQKPHKSKK WFGKSKKLDV TNSGAAYSPR TVKDAKLKEI EEQQSRHAYS VAIATAAAAE AAVAAAQAAA EVVRLSALSR
101: FPGKSMEEIA AIKIQTAFRG YMARRALRAL RGLVRLKSLV QGKCVRRQAT STLQSMQTLA RVQYQIRERR LRLSEDKQAL TRQLQQKHNK DFDKTGENWN
201: DSTLSREKVE ANMLNKQVAT MRREKALAYA FSHQNTWKNS TKMGSQTFMD PNNPHWGWSW LERWMAARPN ENHSLTPDNA EKDSSARSVA SRAMSEMIPR
301: GKNLSPRGKT PNSRRGSSPR VRQVPSEDSN SIVSFQSEQP CNRRHSTCGS IPSTRDDESF TSSFSQSVPG YMAPTQAAKA RARFSNLSPL SSEKTAKKRL
401: SFSGSPKTVR RFSGPPKLES NVTKKDTNLA
101: FPGKSMEEIA AIKIQTAFRG YMARRALRAL RGLVRLKSLV QGKCVRRQAT STLQSMQTLA RVQYQIRERR LRLSEDKQAL TRQLQQKHNK DFDKTGENWN
201: DSTLSREKVE ANMLNKQVAT MRREKALAYA FSHQNTWKNS TKMGSQTFMD PNNPHWGWSW LERWMAARPN ENHSLTPDNA EKDSSARSVA SRAMSEMIPR
301: GKNLSPRGKT PNSRRGSSPR VRQVPSEDSN SIVSFQSEQP CNRRHSTCGS IPSTRDDESF TSSFSQSVPG YMAPTQAAKA RARFSNLSPL SSEKTAKKRL
401: SFSGSPKTVR RFSGPPKLES NVTKKDTNLA
Arabidopsis Description
IQD3IQD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCT8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.