Factsheet for TraesCS1D01G064700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03040.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT5G03040.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT5G03040.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT5G03040.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT5G03040.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT5G03040.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT5G03040.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT5G03040.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT5G03040.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G082100.1	Wheat	cytosol	98.54	98.12
TraesCS1A01G064100.1	Wheat	cytosol	97.91	97.5
HORVU1Hr1G013210.1	Barley	cytosol	97.7	96.49
Os05t0123200-01	Rice	plasma membrane	83.89	84.6
KXG21175	Sorghum	cytosol	79.08	79.92
Zm00001d035492_P009	Maize	cytosol	78.03	78.36
Zm00001d010975_P003	Maize	cytosol	76.78	76.78
GSMUA_Achr3P17820_001	Banana	cytosol	62.76	62.76
GSMUA_Achr10P...	Banana	nucleus	57.53	61.11
TraesCS3D01G543500.1	Wheat	cytosol	58.37	56.25
VIT_08s0040g02360.t01	Wine grape	nucleus	55.65	55.53
GSMUA_Achr7P18240_001	Banana	cytosol	53.77	54.45
Solyc10g084280.1.1	Tomato	nucleus	52.93	52.93
PGSC0003DMT400027139	Potato	cytosol	52.72	52.39
KRH67648	Soybean	nucleus	52.09	52.2
KRG95941	Soybean	nucleus	52.09	52.2
CDY11238	Canola	cytosol, plastid	44.56	51.57
Solyc10g086060.1.1	Tomato	cytosol	50.21	50.96
PGSC0003DMT400045333	Potato	cytosol	50.21	50.96
PGSC0003DMT400004433	Potato	cytosol	50.84	50.62
Solyc09g007410.2.1	Tomato	cytosol	51.05	50.52
KRH32420	Soybean	cytosol	50.0	50.42
CDX80849	Canola	cytosol, plastid	44.77	50.23
KRH19825	Soybean	cytosol	49.16	50.0
TraesCS3D01G346500.1	Wheat	cytosol	49.79	47.7
CDY10410	Canola	cytosol, plastid	43.93	47.3
AT5G03040.1	Thale cress	cytosol, plastid	45.61	47.29
CDY55696	Canola	nucleus, plastid	42.89	46.91
CDY04876	Canola	nucleus, plastid	43.51	46.74
Bra028854.1-P	Field mustard	nucleus, plastid	43.31	46.52
Bra009554.1-P	Field mustard	cytosol	42.26	42.89
CDX70333	Canola	cytosol	42.89	42.71
AT3G09710.2	Thale cress	nucleus	41.21	42.09
Bra034081.1-P	Field mustard	nucleus	37.24	40.09
Bra001299.1-P	Field mustard	nucleus	34.94	35.31
CDX73992	Canola	nucleus	35.15	35.22
CDY07937	Canola	nucleus	33.47	33.47
CDY22198	Canola	cytosol	38.7	33.09
CDY41307	Canola	cytosol	37.66	32.91
TraesCS1D01G287100.2	Wheat	cytosol	34.1	30.81
TraesCS3D01G107700.1	Wheat	cytosol	25.73	28.28
TraesCS7D01G107600.2	Wheat	nucleus	17.99	26.3
TraesCS3D01G251800.2	Wheat	cytosol	23.64	25.51
TraesCS5D01G037300.2	Wheat	nucleus	22.18	24.65
TraesCS5D01G382500.1	Wheat	nucleus	21.13	23.06
TraesCS1D01G367300.2	Wheat	mitochondrion, plastid	20.92	22.17
TraesCS3D01G392900.1	Wheat	cytosol	26.57	20.42

Protein Annotations

EnsemblPlants:TraesCS1D01G064700.1	EnsemblPlantsGene:TraesCS1D01G064700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:DUF4005
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF89	PFAM:PF00612	PFAM:PF13178
PFscan:PS50096	SEG:seg	SMART:SM00015	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1D:-:46181913..46185725

Molecular Weight (calculated)

52192.1 Da

IEP (calculated)

10.810

GRAVY (calculated)

-0.726

Length

478 amino acids

Sequence
(BLAST)

001: MGKKGKWLGA VKKVFSPESK EKKEEKLRKK LAARDPSPPD LTPSTSLEVN VSMPPPPPAV PSPHQTEEVQ VRDVELEQEQ EQSKHVTVEA APDAPAQTSA
101: ALPPGVSREE LAAIKIQTAF RGYLARRALR ALRGLVRLKS LVEGNSVKRQ AASTLRCMQT LARVQSQIRS RRLKMSEENQ ALQRQLLLKQ ELDSLRMGEH
201: WDDTTQSKEK IEASLISRQE AAIRRERALA YAFSHQWKSS SRSSNPMFVD PNNPHWGWSW LERWMAAKPS EAGRTGTGKE SNIDQGSVKS TSLNLGEGEI
301: TKAFNRRGSK PDKSSPTTPK LTRPASRLSP CTPTAKVTPI VVKKKSATPK NGISQVDDDA RSVLSVQSER PRRHSIATST VRDDESLASS LSVPSYMAAT
401: KSARAKSRLQ GSPLIDSAET TPEKGGSVSV GSAKKRLSFP AGGVPPSPMR RHSGPPKVES MVKDIPEAPQ PEALAISG

Best Arabidopsis Sequence Match ( AT5G03040.2 )
(BLAST)

001: MGKKAKWFSS VKKAFSPDSK KSKQKLAEGQ NGVISNPPVV DNVRQSSSSP PPALAPREVR VAEVIVERNR DLSPPSTADA VNVTATDVPV VPSSSAPGVV
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S

Arabidopsis Description

iqd2At5g03040/F15A17_70 [Source:UniProtKB/TrEMBL;Acc:Q93ZH7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.