Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 77.82 | 82.67 |
| GSMUA_Achr7P18240_001 | Banana | cytosol | 67.36 | 68.22 |
| Os05t0123200-01 | Rice | plasma membrane | 64.23 | 64.77 |
| TraesCS1D01G064700.1 | Wheat | cytosol | 62.76 | 62.76 |
| KXG21175 | Sorghum | cytosol | 61.92 | 62.58 |
| TraesCS1B01G082100.1 | Wheat | cytosol | 62.76 | 62.5 |
| TraesCS1A01G064100.1 | Wheat | cytosol | 62.55 | 62.29 |
| HORVU1Hr1G013210.1 | Barley | cytosol | 62.55 | 61.78 |
| Zm00001d035492_P009 | Maize | cytosol | 61.51 | 61.76 |
| Zm00001d010975_P003 | Maize | cytosol | 59.0 | 59.0 |
| VIT_08s0040g02360.t01 | Wine grape | nucleus | 58.37 | 58.25 |
| KRG95941 | Soybean | nucleus | 55.86 | 55.97 |
| KRH67648 | Soybean | nucleus | 55.44 | 55.56 |
| Solyc09g007410.2.1 | Tomato | cytosol | 55.86 | 55.28 |
| PGSC0003DMT400004433 | Potato | cytosol | 55.44 | 55.21 |
| Solyc10g084280.1.1 | Tomato | nucleus | 55.02 | 55.02 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 52.72 | 54.9 |
| GSMUA_Achr7P22680_001 | Banana | cytosol | 53.35 | 54.84 |
| PGSC0003DMT400027139 | Potato | cytosol | 55.02 | 54.68 |
| PGSC0003DMT400045333 | Potato | cytosol | 52.72 | 53.5 |
| Solyc10g086060.1.1 | Tomato | cytosol | 52.72 | 53.5 |
| CDY11238 | Canola | cytosol, plastid | 45.82 | 53.03 |
| KRH19825 | Soybean | cytosol | 51.88 | 52.77 |
| GSMUA_Achr10P... | Banana | cytosol | 46.23 | 52.37 |
| KRH32420 | Soybean | cytosol | 51.46 | 51.9 |
| CDX80849 | Canola | cytosol, plastid | 46.23 | 51.88 |
| TraesCS3D01G543500.1 | Wheat | cytosol | 51.26 | 49.4 |
| CDY10410 | Canola | cytosol, plastid | 45.61 | 49.1 |
| AT5G03040.1 | Thale cress | cytosol, plastid | 47.28 | 49.02 |
| CDY04876 | Canola | nucleus, plastid | 45.61 | 48.99 |
| CDY55696 | Canola | nucleus, plastid | 44.56 | 48.74 |
| Bra028854.1-P | Field mustard | nucleus, plastid | 45.19 | 48.54 |
| TraesCS3B01G603500.1 | Wheat | cytosol, mitochondrion | 51.46 | 46.77 |
| TraesCS3A01G538100.1 | Wheat | cytosol, mitochondrion | 51.26 | 46.14 |
| GSMUA_Achr11P... | Banana | mitochondrion | 43.93 | 45.45 |
| CDX70333 | Canola | cytosol | 44.35 | 44.17 |
| AT3G09710.2 | Thale cress | nucleus | 43.1 | 44.02 |
| Bra009554.1-P | Field mustard | cytosol | 43.31 | 43.95 |
| HORVU3Hr1G117830.2 | Barley | endoplasmic reticulum, extracellular | 53.14 | 43.49 |
| Bra034081.1-P | Field mustard | nucleus | 37.24 | 40.09 |
| Bra001299.1-P | Field mustard | nucleus | 35.56 | 35.94 |
| CDX73992 | Canola | nucleus | 35.36 | 35.43 |
| CDY07937 | Canola | nucleus | 34.1 | 34.1 |
| CDY22198 | Canola | cytosol | 38.7 | 33.09 |
| CDY41307 | Canola | cytosol | 37.66 | 32.91 |
| GSMUA_Achr1P18950_001 | Banana | nucleus | 30.54 | 31.88 |
| GSMUA_Achr7P02870_001 | Banana | mitochondrion | 19.67 | 31.23 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 29.5 | 30.59 |
| GSMUA_Achr6P02050_001 | Banana | cytosol | 9.83 | 30.32 |
| GSMUA_Achr1P16160_001 | Banana | nucleus | 28.24 | 30.13 |
| GSMUA_Achr4P31410_001 | Banana | cytosol | 27.62 | 30.0 |
| GSMUA_Achr8P32220_001 | Banana | cytosol | 27.41 | 29.98 |
| GSMUA_Achr4P22800_001 | Banana | cytosol | 27.2 | 29.95 |
| GSMUA_Achr2P20050_001 | Banana | nucleus | 18.41 | 29.73 |
| GSMUA_Achr2P16650_001 | Banana | nucleus | 25.94 | 29.25 |
| GSMUA_Achr5P02600_001 | Banana | cytosol | 26.36 | 28.7 |
| GSMUA_Achr6P14440_001 | Banana | nucleus | 10.25 | 28.66 |
| GSMUA_Achr6P04930_001 | Banana | cytosol | 24.27 | 28.57 |
| GSMUA_Achr7P09640_001 | Banana | endoplasmic reticulum | 24.06 | 27.91 |
| GSMUA_Achr10P... | Banana | cytosol | 24.69 | 27.9 |
| GSMUA_Achr10P... | Banana | cytosol | 26.36 | 27.88 |
| GSMUA_Achr6P35280_001 | Banana | endoplasmic reticulum | 17.57 | 27.36 |
| GSMUA_Achr2P15730_001 | Banana | cytosol | 23.43 | 25.4 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P17820_001 | EnsemblPlants:GSMUA_Achr3T17820_001 | EnsemblPlantsGene:GSMUA_Achr3G17820_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:DUF4005 | InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF89 | PFAM:PF00612 |
| PFAM:PF13178 | PFscan:PS50096 | SEG:seg | SMART:SM00015 | UniParc:UPI0002950B59 | UniProt:M0SFJ8 |
| MapMan:35.1 | : | : | : | : | : |
Description
Putative Protein IQ-DOMAIN 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G17820_001]
Coordinates
chr3:+:19331565..19340932
Molecular Weight (calculated)
53103.1 Da
IEP (calculated)
10.535
GRAVY (calculated)
-0.762
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKAKWFGA VKKVFSPESK EKKEERLKKK LEDGTSKHPD PCPAESLECT AREAVPPPPL PHPDEDKVVE IETEQSKHAC SVATPAAVEP VVTSAEAARE
101: VISLTTRTKF PGKSREEIAA IKIQTAFRGH LARRALRALR GLVRLKSLID GNSVKRQATS TLRCMQTLAR VQSQIRARRI RMLEDNQALQ KQMLLKHERE
201: LESLKMGEEW DDSLQTKEQI EAGLLSKQEA AIRRERALAY AFSHQWKSSS KSVNPMFMDP NNLQWGWSWL ERWMAARPWE TRSTTDRELN NDRASVKSTM
301: QSDGGGEILK AYANRGSNPE KPSPVVLKLS RPASRQSPST PPNKAPWSMG KIKSASPKCS WVPLEDDSRS IVSVQSERSR RHSLATASVR DDESLAGSAS
401: VPSYMAPTES ARAKSRFQSL SNDNNIDSPD KTSVSSVKKR LSFPTGDKFS PASPAPMRRN SGPPKVDMAS VKDVAVQS
101: VISLTTRTKF PGKSREEIAA IKIQTAFRGH LARRALRALR GLVRLKSLID GNSVKRQATS TLRCMQTLAR VQSQIRARRI RMLEDNQALQ KQMLLKHERE
201: LESLKMGEEW DDSLQTKEQI EAGLLSKQEA AIRRERALAY AFSHQWKSSS KSVNPMFMDP NNLQWGWSWL ERWMAARPWE TRSTTDRELN NDRASVKSTM
301: QSDGGGEILK AYANRGSNPE KPSPVVLKLS RPASRQSPST PPNKAPWSMG KIKSASPKCS WVPLEDDSRS IVSVQSERSR RHSLATASVR DDESLAGSAS
401: VPSYMAPTES ARAKSRFQSL SNDNNIDSPD KTSVSSVKKR LSFPTGDKFS PASPAPMRRN SGPPKVDMAS VKDVAVQS
001: MGKKAKWFSS VKKAFSPDSK KSKQKLAEGQ NGVISNPPVV DNVRQSSSSP PPALAPREVR VAEVIVERNR DLSPPSTADA VNVTATDVPV VPSSSAPGVV
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S
Arabidopsis Description
iqd2At5g03040/F15A17_70 [Source:UniProtKB/TrEMBL;Acc:Q93ZH7]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.