CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86457
CDX90725
CDY05064
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03040.1	CDX86457	AT3G27960.1	21798944
AT5G03040.1	CDY58518	AT3G27960.1	21798944
AT5G03040.1	CDX90725	AT4G09570.1	19130088
AT5G03040.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04876	Canola	nucleus, plastid	95.19	93.48
Bra028854.1-P	Field mustard	nucleus, plastid	94.74	93.03
CDY11238	Canola	cytosol, plastid	81.24	85.96
CDX80849	Canola	cytosol, plastid	83.3	85.45
CDY10410	Canola	cytosol, plastid	83.52	82.21
AT5G03040.1	Thale cress	cytosol, plastid	85.81	81.34
CDX70333	Canola	cytosol	81.24	73.96
KRG95941	Soybean	nucleus	54.23	49.69
KRH67648	Soybean	nucleus	52.63	48.22
KRH32420	Soybean	cytosol	51.72	47.68
KRH19825	Soybean	cytosol	51.26	47.66
CDX73992	Canola	nucleus	50.57	46.33
VIT_08s0040g02360.t01	Wine grape	nucleus	50.34	45.93
PGSC0003DMT400045333	Potato	cytosol	49.43	45.86
Solyc10g086060.1.1	Tomato	cytosol	49.43	45.86
Solyc10g084280.1.1	Tomato	nucleus	50.11	45.82
GSMUA_Achr10P...	Banana	nucleus	47.14	45.78
PGSC0003DMT400027139	Potato	cytosol	49.89	45.32
PGSC0003DMT400004433	Potato	cytosol	49.66	45.21
CDY07937	Canola	nucleus	49.43	45.19
GSMUA_Achr3P17820_001	Banana	cytosol	48.74	44.56
Solyc09g007410.2.1	Tomato	cytosol	49.2	44.51
KXG21175	Sorghum	cytosol	47.37	43.76
Os05t0123200-01	Rice	plasma membrane	47.37	43.67
Zm00001d035492_P009	Maize	cytosol	46.91	43.07
TraesCS1A01G064100.1	Wheat	cytosol	47.14	42.92
TraesCS1D01G064700.1	Wheat	cytosol	46.91	42.89
Zm00001d010975_P003	Maize	cytosol	46.68	42.68
HORVU1Hr1G013210.1	Barley	cytosol	47.14	42.56
TraesCS1B01G082100.1	Wheat	cytosol	46.68	42.5
CDY41307	Canola	cytosol	53.09	42.41
CDY22198	Canola	cytosol	53.78	42.04
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	43.02	40.96
CDX95328	Canola	cytosol	41.65	40.9
CDY23202	Canola	cytosol	41.42	40.67
GSMUA_Achr7P22680_001	Banana	cytosol	42.79	40.22
GSMUA_Achr7P18240_001	Banana	cytosol	43.25	40.04
TraesCS3D01G543500.1	Wheat	cytosol	44.85	39.52
GSMUA_Achr10P...	Banana	cytosol	37.53	38.86
TraesCS3A01G538100.1	Wheat	cytosol, mitochondrion	44.62	36.72
TraesCS3B01G603500.1	Wheat	cytosol, mitochondrion	44.16	36.69
Os01t0833800-01	Rice	plasma membrane	41.19	36.0
KXG33651	Sorghum	cytosol	40.96	35.94
GSMUA_Achr11P...	Banana	mitochondrion	37.76	35.71
HORVU3Hr1G087500.2	Barley	cytosol	40.5	35.47
TraesCS3A01G352500.1	Wheat	cytosol	40.5	35.47
TraesCS3B01G385100.1	Wheat	cytosol	40.5	35.47
TraesCS3D01G346500.1	Wheat	cytosol	40.5	35.47
Zm00001d042973_P007	Maize	cytosol	40.5	34.91
HORVU3Hr1G117830.2	Barley	endoplasmic reticulum, extracellular	44.62	33.39
CDY17214	Canola	cytosol, plastid	19.68	32.45
CDY27925	Canola	plastid	19.68	32.45
CDY38525	Canola	cytosol	28.15	29.78
CDY62768	Canola	cytosol	18.76	29.6
CDY37387	Canola	cytosol	25.4	28.91
CDY24286	Canola	cytosol	25.63	27.72
CDY35313	Canola	nucleus	25.17	27.71
CDY10618	Canola	cytosol	25.63	27.59
CDX77034	Canola	cytosol	24.94	27.53
CDX92933	Canola	cytosol, plastid	24.94	27.18
Os05t0463300-00	Rice	plasma membrane	31.12	27.09
CDY32322	Canola	cytosol, plastid	16.02	27.03
CDX96427	Canola	cytosol	14.87	26.75
HORVU1Hr1G071700.1	Barley	nucleus	31.35	26.65
TraesCS1D01G287100.2	Wheat	cytosol	32.04	26.46
TraesCS1A01G288100.2	Wheat	nucleus	31.12	26.1
CDX92931	Canola	mitochondrion, nucleus	15.1	25.88
CDY20099	Canola	cytosol	15.56	25.76
TraesCS1B01G297500.1	Wheat	cytosol	31.12	25.76
CDX72935	Canola	cytosol	15.1	25.1
CDY30433	Canola	cytosol	25.63	24.89
CDX83237	Canola	cytosol	28.83	24.85
OQU78148	Sorghum	cytosol	31.81	24.82
CDY39505	Canola	cytosol	21.97	24.3
CDX71881	Canola	nucleus	27.46	24.29
CDY05984	Canola	nucleus	27.46	24.24
CDY26241	Canola	nucleus	20.37	23.73
CDY48305	Canola	nucleus	20.37	23.73
CDY23391	Canola	cytosol	24.71	23.43
CDY05917	Canola	mitochondrion, nucleus	25.4	23.37
CDY15200	Canola	nucleus	27.23	23.29
CDY58749	Canola	cytosol	24.26	23.25
CDY08120	Canola	mitochondrion, nucleus	25.17	23.21
CDX90011	Canola	nucleus	26.77	23.03
CDX86983	Canola	nucleus	24.49	22.53
CDY08131	Canola	nucleus	17.62	22.38
CDY00196	Canola	nucleus	24.03	22.11
CDY24282	Canola	mitochondrion	15.33	21.97
CDY05931	Canola	nucleus	17.39	21.59
CDY05111	Canola	nucleus	21.05	21.45
CDY69140	Canola	mitochondrion, nucleus	25.4	21.14
CDX90766	Canola	nucleus	20.82	21.11
CDX91859	Canola	mitochondrion, nucleus	25.4	20.94
CDX79809	Canola	nucleus	28.38	20.74
CDY05918	Canola	mitochondrion	14.87	20.7
Zm00001d038395_P005	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	30.66	20.62
CDY66694	Canola	nucleus	27.69	20.2
CDX83468	Canola	plasma membrane	25.17	19.96
CDY44247	Canola	nucleus	24.71	19.42
CDX72934	Canola	nucleus, plastid	3.43	14.71
CDX96426	Canola	nucleus, plastid	3.43	14.71

Protein Annotations

EnsemblPlants:CDY55696	EnsemblPlantsGene:GSBRNA2T00017201001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048
InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF28	PFAM:PF00612	PFscan:PS50096	ProteinID:CDY55696
ProteinID:CDY55696.1	SEG:seg	SMART:SM00015	UniParc:UPI0004EE8242	UniProt:A0A078J186	MapMan:35.1

Description

BnaC02g03410DBnaC02g03410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J186]

Coordinates

chrLK033421:-:36963..39367

Molecular Weight (calculated)

47805.3 Da

IEP (calculated)

11.254

GRAVY (calculated)

-0.863

Length

437 amino acids

Sequence
(BLAST)

001: MGKKAKWFSS VKKAFSPDSK KSKRKSPESS NGVVSNPPPP PLADHHARQS SPPAPLEVRV AEVIVEQNIN LSAPSTDAVN ATTSDIPVVP SSSAPRAAAP
101: TRFAGKSNEE AAAILIQTVF RGYLAKRAIR AMRGLVRLRL LMEGSVVKRQ AANTLKCMQT LSRVQSQIRA RRIRMSEENQ ARQKQLLQKH AKELAGLKNG
201: DNWDDSIQSK EKVEAKLLSK YEATMRRERA LAYAYTHQQN WKNNSKSGNP MFMDPSNPTW GWSWLERWMA GRPLDNSSEQ NNDNAASKPI TRNNSTQPNT
301: PSSARGGGGT PRNKNSFFSP PTPSRLNQSS RKSNDDDAKS TISVLSERNR RHSIAGSSVR DDESLAGSQT LPSYMVPTKS ARARVNKPQS PSSGGGTTQE
401: NDGFTAKKRL SYPASPALPK PRRFSAPPKV EGAAVSP

Best Arabidopsis Sequence Match ( AT5G03040.2 )
(BLAST)

001: MGKKAKWFSS VKKAFSPDSK KSKQKLAEGQ NGVISNPPVV DNVRQSSSSP PPALAPREVR VAEVIVERNR DLSPPSTADA VNVTATDVPV VPSSSAPGVV
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S

Arabidopsis Description

iqd2At5g03040/F15A17_70 [Source:UniProtKB/TrEMBL;Acc:Q93ZH7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.